MirGeneDB 3.0
MirGeneDB ID

Spt-Mir-19-P1a

Family name MIR-19 (all species)
Seed GUGCAAA
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-19-P2a  Spt-Mir-19-P2c 
Orthologues Aca-Mir-19-P1a  Ami-Mir-19-P1a  Bta-Mir-19-P1a  Cfa-Mir-19-P1a  Cja-Mir-19-P1a  Cli-Mir-19-P1a  Cmi-Mir-19-P1a-v1  Cmi-Mir-19-P1a-v2  Cpi-Mir-19-P1a  Cpo-Mir-19-P1a  Dno-Mir-19-P1a  Dre-Mir-19-P1a1  Dre-Mir-19-P1a2  Eca-Mir-19-P1a  Ete-Mir-19-P1a  Gga-Mir-19-P1a  Gja-Mir-19-P1a  Gmo-Mir-19-P1a1  Gmo-Mir-19-P1a2  Hsa-Mir-19-P1a  Laf-Mir-19-P1a  Lch-Mir-19-P1a  Loc-Mir-19-P1a  Mal-Mir-19-P1a2  Mdo-Mir-19-P1a  Mml-Mir-19-P1a  Mmr-Mir-19-P1a  Mmu-Mir-19-P1a  Mun-Mir-19-P1a  Neu-Mir-19-P1a  Oan-Mir-19-P1a  Ocu-Mir-19-P1a  Pab-Mir-19-P1a  Pbv-Mir-19-P1a  Rno-Mir-19-P1a  Sha-Mir-19-P1a  Sto-Mir-19-P1a-v1  Sto-Mir-19-P1a-v2  Tgu-Mir-19-P1a  Tni-Mir-19-P1a1  Tni-Mir-19-P1a2  Xla-Mir-19-P1a3  Xla-Mir-19-P1a4  Xtr-Mir-19-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)		 QEPC01001394.1: 2547937-2547994 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGUAGCUUUCUACUUUGCAGUCCUCUGUUAGUUUUGCAUAGUUGCACUACAAGAAGAAUGUAGUUGUGCAAAUCUAUGCAAAACUGAUUGUGGCCUGUUAUUGUCUACAUCAAGAAG
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Structure
        10          20        30        40          50       
CUGUAGCUUUCUACUUU--    U  UCU               --|     U  AAGAA 
                   GCAG CC   GUUAGUUUUGCAUAG  UUGCAC AC     G
                   UGUC GG   UAGUCAAAACGUAUC  AACGUG UG     A
GAAGAACUACAUCUGUUAU    C  UGU               UA^     U  AUGUA 
      110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Star sequence

Spt-Mir-19-P1a_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGUUUUGCAUAGUUGCACUAC -21
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Mature sequence

Spt-Mir-19-P1a_3p (predicted)
mirBase accessionNone
Sequence 
35- UGUGCAAAUCUAUGCAAAACUGA -58
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