MirGeneDB 3.0

MirGeneDB ID

Gga-Mir-19-P1a

Family name MIR-19 (all species)
Seed GUGCAAA
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-19a
Paralogues Gga-Mir-19-P2a  Gga-Mir-19-P2c 
Orthologues Aca-Mir-19-P1a  Ami-Mir-19-P1a  Bta-Mir-19-P1a  Cfa-Mir-19-P1a  Cja-Mir-19-P1a  Cli-Mir-19-P1a  Cmi-Mir-19-P1a-v1  Cmi-Mir-19-P1a-v2  Cpi-Mir-19-P1a  Cpo-Mir-19-P1a  Dno-Mir-19-P1a  Dre-Mir-19-P1a1  Dre-Mir-19-P1a2  Eca-Mir-19-P1a  Ete-Mir-19-P1a  Gja-Mir-19-P1a  Gmo-Mir-19-P1a1  Gmo-Mir-19-P1a2  Hsa-Mir-19-P1a  Laf-Mir-19-P1a  Lch-Mir-19-P1a  Loc-Mir-19-P1a  Mal-Mir-19-P1a2  Mdo-Mir-19-P1a  Mml-Mir-19-P1a  Mmr-Mir-19-P1a  Mmu-Mir-19-P1a  Mun-Mir-19-P1a  Neu-Mir-19-P1a  Oan-Mir-19-P1a  Ocu-Mir-19-P1a  Pab-Mir-19-P1a  Pbv-Mir-19-P1a  Rno-Mir-19-P1a  Sha-Mir-19-P1a  Spt-Mir-19-P1a  Sto-Mir-19-P1a-v1  Sto-Mir-19-P1a-v2  Tgu-Mir-19-P1a  Tni-Mir-19-P1a1  Tni-Mir-19-P1a2  Xla-Mir-19-P1a3  Xla-Mir-19-P1a4  Xtr-Mir-19-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)
1: 149440280-149440337 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P1a)
Mir-92-P1a 1: 149439857-149439915 [-] UCSC Ensembl
Mir-19-P2a 1: 149439972-149440032 [-] UCSC Ensembl
Mir-17-P4a 1: 149440105-149440163 [-] UCSC Ensembl
Mir-19-P1a 1: 149440280-149440337 [-] UCSC Ensembl
Mir-17-P2a 1: 149440419-149440483 [-] UCSC Ensembl
Mir-17-P1a 1: 149440570-149440630 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGUAGCUUUCUGCUUUGCAGUCUUCUGUUAGUUUUGCAUAGUUGCACUACAGGAAGAAUGUAGUUGUGCAAAUCUAUGCAAAACUGAUGGUGGCCUGUUAUAAUCUACAUCAAGGAG
Get precursor sequence
Structure
        10          20        30        40          50       
CAGUAGCUUUCUGCUUU--    U  U                 --|     U  AGGAA 
                   GCAG CU CUGUUAGUUUUGCAUAG  UUGCAC AC     G
                   UGUC GG GGUAGUCAAAACGUAUC  AACGUG UG     A
GAGGAACUACAUCUAAUAU    C  U                 UA^     U  AUGUA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut -3 on the 5p arm.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-19-P1a_5p*

mirBase accessionMIMAT0026498
Sequence
0- AGUUUUGCAUAGUUGCACUAC -21
Get sequence
Proposed targets TargetScanVert: gga-miR-19a-5p
miRDB: MIMAT0026498
Mature sequence

Gga-Mir-19-P1a_3p

mirBase accessionMIMAT0001112
Sequence
35- UGUGCAAAUCUAUGCAAAACUGA -58
Get sequence
Proposed targets TargetScanVert: gga-miR-19a-3p
miRDB: MIMAT0001112