Mir-19-P1a2

MirGeneDB ID

Mal-Mir-19-P1a2

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-19-P2a1 Mal-Mir-19-P2a2 Mal-Mir-19-P2d

Orthologues

Aca-Mir-19-P1a Ami-Mir-19-P1a Bta-Mir-19-P1a Cfa-Mir-19-P1a Cja-Mir-19-P1a Cli-Mir-19-P1a Cmi-Mir-19-P1a-v1 Cmi-Mir-19-P1a-v2 Cpi-Mir-19-P1a Cpo-Mir-19-P1a Dno-Mir-19-P1a Dre-Mir-19-P1a2 Eca-Mir-19-P1a Ete-Mir-19-P1a Gga-Mir-19-P1a Gja-Mir-19-P1a Gmo-Mir-19-P1a2 Hsa-Mir-19-P1a Laf-Mir-19-P1a Lch-Mir-19-P1a Loc-Mir-19-P1a Mdo-Mir-19-P1a Mml-Mir-19-P1a Mmr-Mir-19-P1a Mmu-Mir-19-P1a Mun-Mir-19-P1a Neu-Mir-19-P1a Oan-Mir-19-P1a Ocu-Mir-19-P1a Pab-Mir-19-P1a Pbv-Mir-19-P1a Rno-Mir-19-P1a Sha-Mir-19-P1a Spt-Mir-19-P1a Sto-Mir-19-P1a-v1 Sto-Mir-19-P1a-v2 Tgu-Mir-19-P1a Tni-Mir-19-P1a2 Xtr-Mir-19-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884718.1: 1737448-1737505 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGGGCUCAAAUAUCUUGCAGUUCUCUGCUAGUUUUGCAUAGCUGCACUACAAGAAUAGACGAGUUGUGCAAAUCUAUGCAAAACUGAUGGUGGCCUGUGUUUCCCUCUGAACUUUGU

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Structure

        10          20        30        40          50       
UUGGGCUCAAAUAUCUU--    UU U  GC             C--|    U  AAGAA 
                   GCAG  C CU  UAGUUUUGCAUAG   UGCAC AC     U
                   UGUC  G GG  GUCAAAACGUAUC   ACGUG UG     A
UGUUUCAAGUCUCCCUUUG    CG U  UA             UAA^    U  AGCAG 
      110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Star sequence

Mal-Mir-19-P1a2_5p*

mirBase accession

None

Sequence

0- AGUUUUGCAUAGCUGCACUAC -21

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Mature sequence

Mal-Mir-19-P1a2_3p

mirBase accession

None

Sequence

35- UGUGCAAAUCUAUGCAAAACUGA -58

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