Mir-19-P1a

MirGeneDB ID

Mun-Mir-19-P1a

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Microcaecilia (Microcaecilia unicolor)

MiRBase ID

Paralogues

Mun-Mir-19-P2a Mun-Mir-19-P2c Mun-Mir-19-P2d

Orthologues

Aca-Mir-19-P1a Ami-Mir-19-P1a Bta-Mir-19-P1a Cfa-Mir-19-P1a Cja-Mir-19-P1a Cli-Mir-19-P1a Cmi-Mir-19-P1a-v1 Cmi-Mir-19-P1a-v2 Cpi-Mir-19-P1a Cpo-Mir-19-P1a Dno-Mir-19-P1a Dre-Mir-19-P1a1 Dre-Mir-19-P1a2 Eca-Mir-19-P1a Ete-Mir-19-P1a Gga-Mir-19-P1a Gja-Mir-19-P1a Gmo-Mir-19-P1a1 Gmo-Mir-19-P1a2 Hsa-Mir-19-P1a Laf-Mir-19-P1a Lch-Mir-19-P1a Loc-Mir-19-P1a Mal-Mir-19-P1a2 Mdo-Mir-19-P1a Mml-Mir-19-P1a Mmr-Mir-19-P1a Mmu-Mir-19-P1a Neu-Mir-19-P1a Oan-Mir-19-P1a Ocu-Mir-19-P1a Pab-Mir-19-P1a Pbv-Mir-19-P1a Rno-Mir-19-P1a Sha-Mir-19-P1a Spt-Mir-19-P1a Sto-Mir-19-P1a-v1 Sto-Mir-19-P1a-v2 Tgu-Mir-19-P1a Tni-Mir-19-P1a1 Tni-Mir-19-P1a2 Xla-Mir-19-P1a3 Xla-Mir-19-P1a4 Xtr-Mir-19-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Mun_miRNA_loci)

19-P1a_LR594635.1:137686344-137686601: 101-158 [+]

Precursor
(pre-Mir +30nt flank)

AAUAUGAAACAGUAGCUUGCGGUCCUCUUUAGUUUUGCAUAGUUGCACUACAAGAAGAAUAUAGUUGUGCAAAUCUAUGCAAAACUGAUGGUGGCCUGCUAUGGUCAACAGCAAAAGC

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Structure

        10         20         30        40          50       
AAUAUGAAACAGUAGCUU-    U  U  -              --|     U  AAGAA 
                   GCGG CC CU UUAGUUUUGCAUAG  UUGCAC AC     G
                   CGUC GG GG AGUCAAAACGUAUC  AACGUG UG     A
CGAAAACGACAACUGGUAU    C  U  U              UA^     U  AUAUA 
      110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Mun-Mir-19-P1a_5p*

mirBase accession

None

Sequence

0- AGUUUUGCAUAGUUGCACUAC -21

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Mature sequence

Mun-Mir-19-P1a_3p

mirBase accession

None

Sequence

35- UGUGCAAAUCUAUGCAAAACUGA -58

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