Mir-19-P1a-v1

MirGeneDB ID

Sto-Mir-19-P1a-v1

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-19-P1a-v2 Sto-Mir-19-P1c Sto-Mir-19-P2a Sto-Mir-19-P2b Sto-Mir-19-P2c

Orthologues

Aca-Mir-19-P1a Ami-Mir-19-P1a Bta-Mir-19-P1a Cfa-Mir-19-P1a Cja-Mir-19-P1a Cli-Mir-19-P1a Cmi-Mir-19-P1a-v1 Cmi-Mir-19-P1a-v2 Cpi-Mir-19-P1a Cpo-Mir-19-P1a Dno-Mir-19-P1a Dre-Mir-19-P1a1 Dre-Mir-19-P1a2 Eca-Mir-19-P1a Ete-Mir-19-P1a Gga-Mir-19-P1a Gja-Mir-19-P1a Gmo-Mir-19-P1a1 Gmo-Mir-19-P1a2 Hsa-Mir-19-P1a Laf-Mir-19-P1a Lch-Mir-19-P1a Loc-Mir-19-P1a Mal-Mir-19-P1a2 Mdo-Mir-19-P1a Mml-Mir-19-P1a Mmr-Mir-19-P1a Mmu-Mir-19-P1a Mun-Mir-19-P1a Neu-Mir-19-P1a Oan-Mir-19-P1a Ocu-Mir-19-P1a Pab-Mir-19-P1a Pbv-Mir-19-P1a Rno-Mir-19-P1a Sha-Mir-19-P1a Spt-Mir-19-P1a Tgu-Mir-19-P1a Tni-Mir-19-P1a1 Tni-Mir-19-P1a2 Xla-Mir-19-P1a3 Xla-Mir-19-P1a4 Xtr-Mir-19-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003427355_STO_add)

BFAA01005422.1: 25439-25496 [-]

Precursor
(pre-Mir +30nt flank)

AAUGAAUCUUUAGUAUUGCAGUUCUCUACCAGUUUUGCAUGGUUGCACCACAAGAAGAAAUUAGUUGUGCAAAUCUAUGCAAAACUGAUGGUGGACUGGGUUGACUGUUAAGUGGUUU

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Structure

        10          20        30        40          50       
AAUGAAUCUUUAGUAUUG--      U   C             --|     C  AAGAA 
                    CAGUUC CUA CAGUUUUGCAUGG  UUGCAC AC     G
                    GUCAGG GGU GUCAAAACGUAUC  AACGUG UG     A
UUUGGUGAAUUGUCAGUUGG      U   A             UA^     U  AUUAA 
      110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

To

Star sequence

Sto-Mir-19-P1a-v1_5p*

mirBase accession

None

Sequence

0- AGUUUUGCAUGGUUGCACCAC -21

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Mature sequence

Sto-Mir-19-P1a-v1_3p

mirBase accession

None

Sequence

35- UGUGCAAAUCUAUGCAAAACUGA -58

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