MirGeneDB 2.1

MirGeneDB ID

Sto-Mir-19-P1a-v1

Family name MIR-19 (all species)
Seed GUGCAAA
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-19-P1a-v2  Sto-Mir-19-P1c  Sto-Mir-19-P2a  Sto-Mir-19-P2b  Sto-Mir-19-P2c 
Orthologues Aca-Mir-19-P1a  Ami-Mir-19-P1a  Bta-Mir-19-P1a  Cfa-Mir-19-P1a  Cli-Mir-19-P1a  Cmi-Mir-19-P1a-v1  Cmi-Mir-19-P1a-v2  Cpi-Mir-19-P1a  Cpo-Mir-19-P1a  Dno-Mir-19-P1a  Dre-Mir-19-P1a1  Dre-Mir-19-P1a2  Ete-Mir-19-P1a  Gga-Mir-19-P1a  Gja-Mir-19-P1a  Gmo-Mir-19-P1a1  Gmo-Mir-19-P1a2  Hsa-Mir-19-P1a  Lch-Mir-19-P1a  Loc-Mir-19-P1a  Mal-Mir-19-P1a2  Mdo-Mir-19-P1a  Mml-Mir-19-P1a  Mmu-Mir-19-P1a  Mun-Mir-19-P1a  Oan-Mir-19-P1a  Ocu-Mir-19-P1a  Pbv-Mir-19-P1a  Rno-Mir-19-P1a  Sha-Mir-19-P1a  Spt-Mir-19-P1a  Tgu-Mir-19-P1a  Tni-Mir-19-P1a1  Tni-Mir-19-P1a2  Xla-Mir-19-P1a3  Xla-Mir-19-P1a4  Xtr-Mir-19-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)
BFAA01005422.1: 25439-25496 [-]
Precursor
(pre-Mir +30nt flank)
AAUGAAUCUUUAGUAUUGCAGUUCUCUACCAGUUUUGCAUGGUUGCACCACAAGAAGAAAUUAGUUGUGCAAAUCUAUGCAAAACUGAUGGUGGACUGGGUUGACUGUUAAGUGGUUU
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Structure
        10          20        30        40          50       
AAUGAAUCUUUAGUAUUG--      U   C             --|     C  AAGAA 
                    CAGUUC CUA CAGUUUUGCAUGG  UUGCAC AC     G
                    GUCAGG GGU GUCAAAACGUAUC  AACGUG UG     A
UUUGGUGAAUUGUCAGUUGG      U   A             UA^     U  AUUAA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
To
Star sequence

Sto-Mir-19-P1a-v1_5p*

mirBase accessionNone
Sequence
0- AGUUUUGCAUGGUUGCACCAC -21
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Mature sequence

Sto-Mir-19-P1a-v1_3p

mirBase accessionNone
Sequence
35- UGUGCAAAUCUAUGCAAAACUGA -58
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