MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-19-P1a

Family name MIR-19 (all species)
Seed GUGCAAA
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-19-P2a  Laf-Mir-19-P2c 
Orthologues Aca-Mir-19-P1a  Ami-Mir-19-P1a  Bta-Mir-19-P1a  Cfa-Mir-19-P1a  Cja-Mir-19-P1a  Cli-Mir-19-P1a  Cmi-Mir-19-P1a-v1  Cmi-Mir-19-P1a-v2  Cpi-Mir-19-P1a  Cpo-Mir-19-P1a  Dno-Mir-19-P1a  Dre-Mir-19-P1a1  Dre-Mir-19-P1a2  Eca-Mir-19-P1a  Ete-Mir-19-P1a  Gga-Mir-19-P1a  Gja-Mir-19-P1a  Gmo-Mir-19-P1a1  Gmo-Mir-19-P1a2  Hsa-Mir-19-P1a  Lch-Mir-19-P1a  Loc-Mir-19-P1a  Mal-Mir-19-P1a2  Mdo-Mir-19-P1a  Mml-Mir-19-P1a  Mmr-Mir-19-P1a  Mmu-Mir-19-P1a  Mun-Mir-19-P1a  Neu-Mir-19-P1a  Oan-Mir-19-P1a  Ocu-Mir-19-P1a  Pab-Mir-19-P1a  Pbv-Mir-19-P1a  Rno-Mir-19-P1a  Sha-Mir-19-P1a  Spt-Mir-19-P1a  Sto-Mir-19-P1a-v1  Sto-Mir-19-P1a-v2  Tgu-Mir-19-P1a  Tni-Mir-19-P1a1  Tni-Mir-19-P1a2  Xla-Mir-19-P1a3  Xla-Mir-19-P1a4  Xtr-Mir-19-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010038.1: 14396874-14396931 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUAGUUUUUUUUGUUUGCAGUCCUCUGUUAGUUUUGCAUAGUUGCACUACAAGAAGAAUGUAGUUGUGCAAAUCUAUGCAAAACUGAUGGUGGCCUGCUCUUCCCUUCAAGUGGUUC
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Structure
        10          20        30        40          50       
AAUAGUUUUUUUUGUUU--    U  U                 --|     U  AAGAA 
                   GCAG CC CUGUUAGUUUUGCAUAG  UUGCAC AC     G
                   CGUC GG GGUAGUCAAAACGUAUC  AACGUG UG     A
CUUGGUGAACUUCCCUUCU    C  U                 UA^     U  AUGUA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Wh
Star sequence

Laf-Mir-19-P1a_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGUUUUGCAUAGUUGCACUAC -21
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Mature sequence

Laf-Mir-19-P1a_3p
mirBase accessionNone
Sequence 
35- UGUGCAAAUCUAUGCAAAACUGA -58
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