MirGeneDB 3.0

MirGeneDB ID

Mdo-Mir-19-P1a

Family name MIR-19 (all species)
Seed GUGCAAA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-19a
Paralogues Mdo-Mir-19-P2a  Mdo-Mir-19-P2c 
Orthologues Aca-Mir-19-P1a  Ami-Mir-19-P1a  Bta-Mir-19-P1a  Cfa-Mir-19-P1a  Cja-Mir-19-P1a  Cli-Mir-19-P1a  Cmi-Mir-19-P1a-v1  Cmi-Mir-19-P1a-v2  Cpi-Mir-19-P1a  Cpo-Mir-19-P1a  Dno-Mir-19-P1a  Dre-Mir-19-P1a1  Dre-Mir-19-P1a2  Eca-Mir-19-P1a  Ete-Mir-19-P1a  Gga-Mir-19-P1a  Gja-Mir-19-P1a  Gmo-Mir-19-P1a1  Gmo-Mir-19-P1a2  Hsa-Mir-19-P1a  Laf-Mir-19-P1a  Lch-Mir-19-P1a  Loc-Mir-19-P1a  Mal-Mir-19-P1a2  Mml-Mir-19-P1a  Mmr-Mir-19-P1a  Mmu-Mir-19-P1a  Mun-Mir-19-P1a  Neu-Mir-19-P1a  Oan-Mir-19-P1a  Ocu-Mir-19-P1a  Pab-Mir-19-P1a  Pbv-Mir-19-P1a  Rno-Mir-19-P1a  Sha-Mir-19-P1a  Spt-Mir-19-P1a  Sto-Mir-19-P1a-v1  Sto-Mir-19-P1a-v2  Tgu-Mir-19-P1a  Tni-Mir-19-P1a1  Tni-Mir-19-P1a2  Xla-Mir-19-P1a3  Xla-Mir-19-P1a4  Xtr-Mir-19-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)
7: 108468619-108468676 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P1a)
Mir-92-P1a 7: 108468200-108468258 [-] UCSC Ensembl
Mir-19-P2a 7: 108468317-108468377 [-] UCSC Ensembl
Mir-17-P4a 7: 108468450-108468508 [-] UCSC Ensembl
Mir-19-P1a 7: 108468619-108468676 [-] UCSC Ensembl
Mir-17-P2a 7: 108468761-108468825 [-] UCSC Ensembl
Mir-17-P1a 7: 108468905-108468965 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAAUAGCUUAUUGUUUGCAGUCCUCUGUUAGUUUUGCAUAGUUGCACUACAAGAAGAAUGUAGUUGUGCAAAUCUAUGCAAAACUGAUGGUGGCCUGCUAUUUCCUUCAUCAAGAGG
Get precursor sequence
Structure
        10          20        30        40          50       
CCAAUAGCUUAUUGUUU--    U  U                 --|     U  AAGAA 
                   GCAG CC CUGUUAGUUUUGCAUAG  UUGCAC AC     G
                   CGUC GG GGUAGUCAAAACGUAUC  AACGUG UG     A
GGAGAACUACUUCCUUUAU    C  U                 UA^     U  AUGUA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Mdo-Mir-19-P1a_5p* (predicted)

mirBase accessionMIMAT0026706
Sequence
0- AGUUUUGCAUAGUUGCACUAC -21
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Proposed targets TargetScanVert: mdo-miR-19a-5p
Mature sequence

Mdo-Mir-19-P1a_3p

mirBase accessionMIMAT0004168
Sequence
35- UGUGCAAAUCUAUGCAAAACUGA -58
Get sequence
Proposed targets TargetScanVert: mdo-miR-19a-3p