MirGeneDB 2.1

MirGeneDB ID

Pbv-Mir-19-P1a

Family name MIR-19 (all species)
Seed GUGCAAA
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-19a
Paralogues Pbv-Mir-19-P2a  Pbv-Mir-19-P2c 
Orthologues Aca-Mir-19-P1a  Ami-Mir-19-P1a  Bta-Mir-19-P1a  Cfa-Mir-19-P1a  Cli-Mir-19-P1a  Cmi-Mir-19-P1a-v1  Cmi-Mir-19-P1a-v2  Cpi-Mir-19-P1a  Cpo-Mir-19-P1a  Dno-Mir-19-P1a  Dre-Mir-19-P1a1  Dre-Mir-19-P1a2  Ete-Mir-19-P1a  Gga-Mir-19-P1a  Gja-Mir-19-P1a  Gmo-Mir-19-P1a1  Gmo-Mir-19-P1a2  Hsa-Mir-19-P1a  Lch-Mir-19-P1a  Loc-Mir-19-P1a  Mal-Mir-19-P1a2  Mdo-Mir-19-P1a  Mml-Mir-19-P1a  Mmu-Mir-19-P1a  Mun-Mir-19-P1a  Oan-Mir-19-P1a  Ocu-Mir-19-P1a  Rno-Mir-19-P1a  Sha-Mir-19-P1a  Spt-Mir-19-P1a  Sto-Mir-19-P1a-v1  Sto-Mir-19-P1a-v2  Tgu-Mir-19-P1a  Tni-Mir-19-P1a1  Tni-Mir-19-P1a2  Xla-Mir-19-P1a3  Xla-Mir-19-P1a4  Xtr-Mir-19-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE958468.1: 77871-77928 [-]
Clustered miRNAs
(< 50kb from Mir-19-P1a)
Mir-92-P1a KE958468.1: 77465-77524 [-]
Mir-19-P2a KE958468.1: 77578-77638 [-]
Mir-17-P4a KE958468.1: 77721-77779 [-]
Mir-19-P1a KE958468.1: 77871-77928 [-]
Mir-17-P2a KE958468.1: 78002-78066 [-]
Mir-17-P1a KE958468.1: 78143-78203 [-]
Precursor
(pre-Mir +30nt flank)
AAACCUAGUAUUGUCUUGCAGUCCUCUGUUAGUUUUGCAUAGUUGCACUACAGGAAGAGUGUAGUUGUGCAAAUCUAUGCAAAACUGAUUGUGGCCUGUUAUUAUCUUCAUAUCUACA
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Structure
        10          20        30        40          50       
AAACCUAGUAUUGUCUU--    U  UCU               --|     U  AGGAA 
                   GCAG CC   GUUAGUUUUGCAUAG  UUGCAC AC     G
                   UGUC GG   UAGUCAAAACGUAUC  AACGUG UG     A
ACAUCUAUACUUCUAUUAU    C  UGU               UA^     U  AUGUG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
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Star sequence

Pbv-Mir-19-P1a_5p*

mirBase accessionMIMAT0038843
Sequence
0- AGUUUUGCAUAGUUGCACUAC -21
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Mature sequence

Pbv-Mir-19-P1a_3p

mirBase accessionMIMAT0038844
Sequence
35- UGUGCAAAUCUAUGCAAAACUGA -58
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