MirGeneDB 2.1

MirGeneDB ID

Hsa-Mir-19-P1a

Family name MIR-19 (all species)
Seed GUGCAAA
Species Human (Homo sapiens)
MiRBase ID hsa-mir-19a
Paralogues Hsa-Mir-19-P2a  Hsa-Mir-19-P2c 
Orthologues Aca-Mir-19-P1a  Ami-Mir-19-P1a  Bta-Mir-19-P1a  Cfa-Mir-19-P1a  Cli-Mir-19-P1a  Cmi-Mir-19-P1a-v1  Cmi-Mir-19-P1a-v2  Cpi-Mir-19-P1a  Cpo-Mir-19-P1a  Dno-Mir-19-P1a  Dre-Mir-19-P1a1  Dre-Mir-19-P1a2  Ete-Mir-19-P1a  Gga-Mir-19-P1a  Gja-Mir-19-P1a  Gmo-Mir-19-P1a1  Gmo-Mir-19-P1a2  Lch-Mir-19-P1a  Loc-Mir-19-P1a  Mal-Mir-19-P1a2  Mdo-Mir-19-P1a  Mml-Mir-19-P1a  Mmu-Mir-19-P1a  Mun-Mir-19-P1a  Oan-Mir-19-P1a  Ocu-Mir-19-P1a  Pbv-Mir-19-P1a  Rno-Mir-19-P1a  Sha-Mir-19-P1a  Spt-Mir-19-P1a  Sto-Mir-19-P1a-v1  Sto-Mir-19-P1a-v2  Tgu-Mir-19-P1a  Tni-Mir-19-P1a1  Tni-Mir-19-P1a2  Xla-Mir-19-P1a3  Xla-Mir-19-P1a4  Xtr-Mir-19-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(hg38)
chr13: 91350904-91350961 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P1a)
Mir-17-P1a chr13: 91350618-91350677 [+] UCSC Ensembl
Mir-17-P2a chr13: 91350756-91350820 [+] UCSC Ensembl
Mir-19-P1a chr13: 91350904-91350961 [+] UCSC Ensembl
Mir-17-P4a chr13: 91351072-91351130 [+] UCSC Ensembl
Mir-19-P2a chr13: 91351207-91351267 [+] UCSC Ensembl
Mir-92-P1a chr13: 91351324-91351382 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUAAUAGUUUUUGUUUGCAGUCCUCUGUUAGUUUUGCAUAGUUGCACUACAAGAAGAAUGUAGUUGUGCAAAUCUAUGCAAAACUGAUGGUGGCCUGCUAUUUCCUUCAAAUGAAUG
Get precursor sequence
Structure
        10          20        30        40          50       
UUUAAUAGUUUUUGUUU--    U  U                 --|     U  AAGAA 
                   GCAG CC CUGUUAGUUUUGCAUAG  UUGCAC AC     G
                   CGUC GG GGUAGUCAAAACGUAUC  AACGUG UG     A
GUAAGUAAACUUCCUUUAU    C  U                 UA^     U  AUGUA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 2- 2- 2- 2- 2- 2- 2- 2- 2- 2- 2- 3- 3- 3- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 5- 5- 5- 5- 5- 5- 5- 6- 6- 6- 6- 6-
Star sequence

Hsa-Mir-19-P1a_5p*

mirBase accessionMIMAT0004490
Sequence
0- AGUUUUGCAUAGUUGCACUAC -21
Get sequence
Proposed targets microrna.org: MIMAT0004490
TargetScanVert: hsa-miR-19a-5p
TargetMiner: hsa-miR-19a-5p
miRDB: MIMAT0004490
Mature sequence

Hsa-Mir-19-P1a_3p

mirBase accessionMIMAT0000073
Sequence
35- UGUGCAAAUCUAUGCAAAACUGA -58
Get sequence
Proposed targets microrna.org: MIMAT0000073
TargetScanVert: hsa-miR-19a-3p
TargetMiner: hsa-miR-19a-3p
miRDB: MIMAT0000073