Mir-19-P2c

MirGeneDB ID

Pbv-Mir-19-P2c

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Burmese python (Python bivittatus)

MiRBase ID

Paralogues

Pbv-Mir-19-P1a Pbv-Mir-19-P2a

Orthologues

Aca-Mir-19-P2c Ami-Mir-19-P2c Bta-Mir-19-P2c Cfa-Mir-19-P2c Cja-Mir-19-P2c Cli-Mir-19-P2c Cmi-Mir-19-P2c Cpi-Mir-19-P2c Cpo-Mir-19-P2c Dno-Mir-19-P2c Dre-Mir-19-P2c Eca-Mir-19-P2c Ete-Mir-19-P2c Gga-Mir-19-P2c Gja-Mir-19-P2c Gmo-Mir-19-P2c Hsa-Mir-19-P2c Laf-Mir-19-P2c Lch-Mir-19-P2c Mdo-Mir-19-P2c Mml-Mir-19-P2c Mmr-Mir-19-P2c Mmu-Mir-19-P2c Mun-Mir-19-P2c Neu-Mir-19-P2c Oan-Mir-19-P2c Ocu-Mir-19-P2c Pab-Mir-19-P2c Rno-Mir-19-P2c Sha-Mir-19-P2c Spt-Mir-19-P2c Sto-Mir-19-P2c Tgu-Mir-19-P2c Xla-Mir-19-P2c3 Xla-Mir-19-P2c4 Xtr-Mir-19-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000186305.2_Python_molurus_bivittatus)

KE958055.1: 454-514 [-]

Clustered miRNAs
(< 50kb from Mir-19-P2c)

Mir-92-P2c KE958055.1: 115-179 [-]
Mir-92-P1c KE958055.1: 286-347 [-]
Mir-17-P4c KE958055.1: 600-662 [-]
Mir-17-P2c KE958055.1: 3575-3639 [-]
Mir-17-P1c KE958055.1: 3752-3809 [-]

Precursor
(pre-Mir +30nt flank)

GCUGAGAAGACUCCGUGCUGACCUACGGUGGGUUUUGCUGGUUUGCAUCUCAGCUUGGCGUCUGUUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGUGGAGGUUGCGAGCAGGAAAAGUG

Get precursor sequence

Structure

        10            20        30         40         50        60
GCUGAGAAGACUCCGUG----| G   U     G        -   -      UCU    UUGGC 
                     CU ACC ACGGU GGUUUUGC UGG UUUGCA   CAGC     G
                     GG UGG UGUCA UCAAAACG ACC AAACGU   GUCG     U
GUGAAAAGGACGAGCGUUGGA^ -   -     G        U   U      ---    UUGUC 
 .       110       100          90        80           70

Deep sequencing

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3' NTU

Motifs

Tissue expression

To

Star sequence

Pbv-Mir-19-P2c_5p* (predicted)

mirBase accession

None

Sequence

0- GGUUUUGCUGGUUUGCAUCUCAGC -24

Get sequence

Mature sequence

Pbv-Mir-19-P2c_3p

mirBase accession

None

Sequence

38- UGUGCAAAUCCAUGCAAAACUGA -61

Get sequence