Mir-19-P2c

MirGeneDB ID

Mdo-Mir-19-P2c

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-19b-2

Paralogues

Mdo-Mir-19-P1a Mdo-Mir-19-P2a

Orthologues

Aca-Mir-19-P2c Ami-Mir-19-P2c Bta-Mir-19-P2c Cfa-Mir-19-P2c Cja-Mir-19-P2c Cli-Mir-19-P2c Cmi-Mir-19-P2c Cpi-Mir-19-P2c Cpo-Mir-19-P2c Dno-Mir-19-P2c Dre-Mir-19-P2c Eca-Mir-19-P2c Ete-Mir-19-P2c Gga-Mir-19-P2c Gja-Mir-19-P2c Gmo-Mir-19-P2c Hsa-Mir-19-P2c Laf-Mir-19-P2c Lch-Mir-19-P2c Mml-Mir-19-P2c Mmr-Mir-19-P2c Mmu-Mir-19-P2c Mun-Mir-19-P2c Neu-Mir-19-P2c Oan-Mir-19-P2c Ocu-Mir-19-P2c Pab-Mir-19-P2c Pbv-Mir-19-P2c Rno-Mir-19-P2c Sha-Mir-19-P2c Spt-Mir-19-P2c Sto-Mir-19-P2c Tgu-Mir-19-P2c Xla-Mir-19-P2c3 Xla-Mir-19-P2c4 Xtr-Mir-19-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(monDom5_add)

X: 35202389-35202447 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2c)

Mir-92-P2c X: 35202093-35202159 [-] UCSC Ensembl
Mir-92-P1c X: 35202231-35202295 [-] UCSC Ensembl
Mir-19-P2c X: 35202389-35202447 [-] UCSC Ensembl
Mir-17-P4c X: 35202543-35202603 [-] UCSC Ensembl
Mir-17-P2c X: 35202855-35202919 [-] UCSC Ensembl
Mir-17-P1c X: 35203052-35203108 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUAGCUUUAAUCCCAGUGCUGCUCACAGUCAGUUUUGCAGGUCUUGCAUCGGCCUAUGUCAAUUGCUGUGCAAAUCCAUGCAAAACUGAUUAGGAGGGCAUUUGCAUCUGCACUUUUGG

Get precursor sequence

Structure

        10           20        30         40        50         
CUAGCUUUAAUCCCAGU---|  G   AC             -  UC     U    CUAUG 
                    GCU CUC  AGUCAGUUUUGCA GG  UUGCA CGGC     \
                    CGG GAG  UUAGUCAAAACGU CC  AACGU GUCG     U
GGUUUUCACGUCUACGUUUA^  -   GA             A  UA     -    UUAAC 
       110       100         90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Ce	He	Ki	Te

Star sequence

Mdo-Mir-19-P2c_5p*

mirBase accession

MIMAT0031025

Sequence

0- AGUUUUGCAGGUCUUGCAUCGGC -23

Get sequence

Proposed targets

TargetScanVert: mdo-miR-19b-2-5p

Mature sequence

Mdo-Mir-19-P2c_3p

mirBase accession

MIMAT0004170

Sequence

36- UGUGCAAAUCCAUGCAAAACUGA -59

Get sequence

Proposed targets

TargetScanVert: mdo-miR-19b-3p