MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-19-P2c

Family name MIR-19 (all species)
Seed GUGCAAA
Species Horse (Equus caballus)
MiRBase ID eca-mir-19b-2
Paralogues Eca-Mir-19-P1a  Eca-Mir-19-P2a 
Orthologues Aca-Mir-19-P2c  Ami-Mir-19-P2c  Bta-Mir-19-P2c  Cfa-Mir-19-P2c  Cja-Mir-19-P2c  Cli-Mir-19-P2c  Cmi-Mir-19-P2c  Cpi-Mir-19-P2c  Cpo-Mir-19-P2c  Dno-Mir-19-P2c  Dre-Mir-19-P2c  Ete-Mir-19-P2c  Gga-Mir-19-P2c  Gja-Mir-19-P2c  Gmo-Mir-19-P2c  Hsa-Mir-19-P2c  Laf-Mir-19-P2c  Lch-Mir-19-P2c  Mdo-Mir-19-P2c  Mml-Mir-19-P2c  Mmr-Mir-19-P2c  Mmu-Mir-19-P2c  Mun-Mir-19-P2c  Neu-Mir-19-P2c  Oan-Mir-19-P2c  Ocu-Mir-19-P2c  Pab-Mir-19-P2c  Pbv-Mir-19-P2c  Rno-Mir-19-P2c  Sha-Mir-19-P2c  Spt-Mir-19-P2c  Sto-Mir-19-P2c  Tgu-Mir-19-P2c  Xla-Mir-19-P2c3  Xla-Mir-19-P2c4  Xtr-Mir-19-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)
CM009179.1: 110758667-110758732 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2c)
Mir-92-P2c CM009179.1: 110758369-110758433 [-] UCSC Ensembl
Mir-92-P1c CM009179.1: 110758530-110758590 [-] UCSC Ensembl
Mir-19-P2c CM009179.1: 110758667-110758732 [-] UCSC Ensembl
Mir-17-P4c CM009179.1: 110758796-110758856 [-] UCSC Ensembl
Mir-17-P2c CM009179.1: 110759029-110759091 [-] UCSC Ensembl
Mir-17-P1c CM009179.1: 110759193-110759251 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAUAUUCAAAGACACUGCUACUUACGAUUAGUUUUGCAGGUUUGCAUUUCAGCGUAUAUAUGUAUAUAUGGCUGUGCAAAUCCAUGCAAAACUGAUUGUGAUAAUGUGUGCUGUCUACGGCUUUG
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Structure
        10        20          30         40         50        60   
GAAUAUUCAAAGACACUGCUAC--                 -  -|     UUU    GUAUAUAU 
                        UUACGAUUAGUUUUGCA GG UUUGCA   CAGC        \
                        AGUGUUAGUCAAAACGU CC AAACGU   GUCG        G
GUUUCGGCAUCUGUCGUGUGUAAU                 A  U^     ---    GUAUAUAU 
    120       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-19-P2c_5p* (predicted)

mirBase accessionNone
Sequence
0- AGUUUUGCAGGUUUGCAUUUCAGC -24
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Mature sequence

Eca-Mir-19-P2c_3p

mirBase accessionMIMAT0013087
Sequence
43- UGUGCAAAUCCAUGCAAAACUGA -66
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