Mir-19-P2c

MirGeneDB ID

Eca-Mir-19-P2c

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-19b-2

Paralogues

Eca-Mir-19-P1a Eca-Mir-19-P2a

Orthologues

Aca-Mir-19-P2c Ami-Mir-19-P2c Bta-Mir-19-P2c Cfa-Mir-19-P2c Cja-Mir-19-P2c Cli-Mir-19-P2c Cmi-Mir-19-P2c Cpi-Mir-19-P2c Cpo-Mir-19-P2c Dno-Mir-19-P2c Dre-Mir-19-P2c Ete-Mir-19-P2c Gga-Mir-19-P2c Gja-Mir-19-P2c Gmo-Mir-19-P2c Hsa-Mir-19-P2c Laf-Mir-19-P2c Lch-Mir-19-P2c Mdo-Mir-19-P2c Mml-Mir-19-P2c Mmr-Mir-19-P2c Mmu-Mir-19-P2c Mun-Mir-19-P2c Neu-Mir-19-P2c Oan-Mir-19-P2c Ocu-Mir-19-P2c Pab-Mir-19-P2c Pbv-Mir-19-P2c Rno-Mir-19-P2c Sha-Mir-19-P2c Spt-Mir-19-P2c Sto-Mir-19-P2c Tgu-Mir-19-P2c Xla-Mir-19-P2c3 Xla-Mir-19-P2c4 Xtr-Mir-19-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 110758667-110758732 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2c)

Mir-92-P2c CM009179.1: 110758369-110758433 [-] UCSC Ensembl
Mir-92-P1c CM009179.1: 110758530-110758590 [-] UCSC Ensembl
Mir-19-P2c CM009179.1: 110758667-110758732 [-] UCSC Ensembl
Mir-17-P4c CM009179.1: 110758796-110758856 [-] UCSC Ensembl
Mir-17-P2c CM009179.1: 110759029-110759091 [-] UCSC Ensembl
Mir-17-P1c CM009179.1: 110759193-110759251 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAUAUUCAAAGACACUGCUACUUACGAUUAGUUUUGCAGGUUUGCAUUUCAGCGUAUAUAUGUAUAUAUGGCUGUGCAAAUCCAUGCAAAACUGAUUGUGAUAAUGUGUGCUGUCUACGGCUUUG

Get precursor sequence

Structure

        10        20          30         40         50        60   
GAAUAUUCAAAGACACUGCUAC--                 -  -|     UUU    GUAUAUAU 
                        UUACGAUUAGUUUUGCA GG UUUGCA   CAGC        \
                        AGUGUUAGUCAAAACGU CC AAACGU   GUCG        G
GUUUCGGCAUCUGUCGUGUGUAAU                 A  U^     ---    GUAUAUAU 
    120       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-19-P2c_5p* (predicted)

mirBase accession

None

Sequence

0- AGUUUUGCAGGUUUGCAUUUCAGC -24

Get sequence

Mature sequence

Eca-Mir-19-P2c_3p

mirBase accession

MIMAT0013087

Sequence

43- UGUGCAAAUCCAUGCAAAACUGA -66

Get sequence