MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-17-P2c

Family name MIR-17 (all species)
Seed AAGGUGC
Species Horse (Equus caballus)
MiRBase ID eca-mir-18b
Paralogues Eca-Mir-17-P1a  Eca-Mir-17-P1c  Eca-Mir-17-P1d  Eca-Mir-17-P2a  Eca-Mir-17-P4a  Eca-Mir-17-P4c  Eca-Mir-17-P4d 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cja-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Laf-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmr-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Neu-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pab-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)
CM009179.1: 110759029-110759091 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2c)
Mir-92-P2c CM009179.1: 110758369-110758433 [-] UCSC Ensembl
Mir-92-P1c CM009179.1: 110758530-110758590 [-] UCSC Ensembl
Mir-19-P2c CM009179.1: 110758667-110758732 [-] UCSC Ensembl
Mir-17-P4c CM009179.1: 110758796-110758856 [-] UCSC Ensembl
Mir-17-P2c CM009179.1: 110759029-110759091 [-] UCSC Ensembl
Mir-17-P1c CM009179.1: 110759193-110759251 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGCUGUUCCUCAUAAUAUGCCUCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAGCAGCUUAGAAUCUACUGCCCUAAAUGCCCCUUCUGGCACAGGCUGCCUACUCUCCAGCAUUAAAA
Get precursor sequence
Structure
        10        20        30          40        50        60 
GAGCUGUUCCUCAUAAUAU  CU         --|  U    C   U     U  UGAAGCA 
                   GC  CUUGUGUUA  AGG GCAU UAG GCAGU AG       G
                   CG  GGACACGGU  UCC CGUA AUC CGUCA UC       C
AAAAUUACGACCUCUCAUC  UC         CU^  C    A   C     -  UAAGAUU 
 120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-17-P2c_5p

mirBase accessionMIMAT0013200
Sequence
0- UAAGGUGCAUCUAGUGCAGUUAG -23
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Star sequence

Eca-Mir-17-P2c_3p* (predicted)

mirBase accessionNone
Sequence
41- ACUGCCCUAAAUGCCCCUUCUG -63
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