Mir-17-P2c

MirGeneDB ID

Eca-Mir-17-P2c

Family name

MIR-17 (all species)

Seed

AAGGUGC

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-18b

Paralogues

Eca-Mir-17-P1a Eca-Mir-17-P1c Eca-Mir-17-P1d Eca-Mir-17-P2a Eca-Mir-17-P4a Eca-Mir-17-P4c Eca-Mir-17-P4d

Orthologues

Aca-Mir-17-P2c Ami-Mir-17-P2c Bta-Mir-17-P2c Cfa-Mir-17-P2c Cja-Mir-17-P2c Cli-Mir-17-P2c Cmi-Mir-17-P2c Cpi-Mir-17-P2c Cpo-Mir-17-P2c Dno-Mir-17-P2c Dre-Mir-17-P2c Ete-Mir-17-P2c Gga-Mir-17-P2c Gja-Mir-17-P2c Gmo-Mir-17-P2c Hsa-Mir-17-P2c Laf-Mir-17-P2c Lch-Mir-17-P2c Loc-Mir-17-P2c Mdo-Mir-17-P2c Mml-Mir-17-P2c Mmr-Mir-17-P2c Mmu-Mir-17-P2c Mun-Mir-17-P2c Neu-Mir-17-P2c Oan-Mir-17-P2c Ocu-Mir-17-P2c Pab-Mir-17-P2c Pbv-Mir-17-P2c Rno-Mir-17-P2c Sha-Mir-17-P2c Spt-Mir-17-P2c Sto-Mir-17-P2c Tgu-Mir-17-P2c Xla-Mir-17-P2c3 Xla-Mir-17-P2c4 Xtr-Mir-17-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 110759029-110759091 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P2c)

Mir-92-P2c CM009179.1: 110758369-110758433 [-] UCSC Ensembl
Mir-92-P1c CM009179.1: 110758530-110758590 [-] UCSC Ensembl
Mir-19-P2c CM009179.1: 110758667-110758732 [-] UCSC Ensembl
Mir-17-P4c CM009179.1: 110758796-110758856 [-] UCSC Ensembl
Mir-17-P2c CM009179.1: 110759029-110759091 [-] UCSC Ensembl
Mir-17-P1c CM009179.1: 110759193-110759251 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAGCUGUUCCUCAUAAUAUGCCUCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAGCAGCUUAGAAUCUACUGCCCUAAAUGCCCCUUCUGGCACAGGCUGCCUACUCUCCAGCAUUAAAA

Get precursor sequence

Structure

        10        20        30          40        50        60 
GAGCUGUUCCUCAUAAUAU  CU         --|  U    C   U     U  UGAAGCA 
                   GC  CUUGUGUUA  AGG GCAU UAG GCAGU AG       G
                   CG  GGACACGGU  UCC CGUA AUC CGUCA UC       C
AAAAUUACGACCUCUCAUC  UC         CU^  C    A   C     -  UAAGAUU 
 120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-17-P2c_5p

mirBase accession

MIMAT0013200

Sequence

0- UAAGGUGCAUCUAGUGCAGUUAG -23

Get sequence

Star sequence

Eca-Mir-17-P2c_3p* (predicted)

mirBase accession

None

Sequence

41- ACUGCCCUAAAUGCCCCUUCUG -63

Get sequence