MirGeneDB 3.0

MirGeneDB ID

Cli-Mir-17-P2c

Family name MIR-17 (all species)
Seed AAGGUGC
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-18b
Paralogues Cli-Mir-17-P1a  Cli-Mir-17-P1c  Cli-Mir-17-P2a  Cli-Mir-17-P4a  Cli-Mir-17-P4c 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cja-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Eca-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Laf-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmr-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Neu-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pab-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)
scaffold72: 3452309-3452373 [-]
Clustered miRNAs
(< 50kb from Mir-17-P2c)
Mir-92-P2c scaffold72: 3451682-3451746 [-]
Mir-92-P1c scaffold72: 3451822-3451883 [-]
Mir-19-P2c scaffold72: 3451991-3452050 [-]
Mir-17-P4c scaffold72: 3452115-3452175 [-]
Mir-17-P2c scaffold72: 3452309-3452373 [-]
Mir-17-P1c scaffold72: 3452469-3452526 [-]
Precursor
(pre-Mir +30nt flank)
UUGGAGCUGCCUUACAAAUGGUUCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAGUAGCGUAGAAUCUACUGCCCUAAAUGCUCCUUCUGGCACAAGCUGCUGCCUGCACGUCCAAAAAGAA
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Structure
        10         20         30          40        50        60 
UUGGAGCUGCCUUACAAAU-   U-         --|  U    C   U     UAGUGAAGUA 
                    GGU  CUUGUGUUA  AGG GCAU UAG GCAGU          \
                    UCG  GAACACGGU  UCC CGUA AUC CGUCA          G
AAGAAAAACCUGCACGUCCG   UC         CU^  U    A   C     UCUAAGAUGC 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-17-P2c_5p

mirBase accessionMIMAT0038425
Sequence
0- UAAGGUGCAUCUAGUGCAGU -20
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Star sequence

Cli-Mir-17-P2c_3p*

mirBase accessionMIMAT0038426
Sequence
43- UGCCCUAAAUGCUCCUUCUGGC -65
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