MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-17-P2c

Family name MIR-17 (all species)
Seed AAGGUGC
Species American alligator (Alligator mississippiensis)
MiRBase ID
Paralogues Ami-Mir-17-P1a  Ami-Mir-17-P1c  Ami-Mir-17-P1d  Ami-Mir-17-P2a  Ami-Mir-17-P4a  Ami-Mir-17-P4c  Ami-Mir-17-P4d 
Orthologues Aca-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cja-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Eca-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Laf-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmr-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Neu-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pab-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017711293.1: 2600210-2600274 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GUUUUGCUGCUUUGCAAAUGUUCCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAGUAGCUUAGAAUCUACUGCCCUAAAUGCUCCUUCUGGCACGAGGUGCAUCAUGUUCGUCUCGCAGGUG
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Structure
        10          20        30          40        50        60 
GUUUUGCUGCUUUGCAA--    U          --|  U    C   U     U  UGAAGUA 
                   AUGU CCUUGUGUUA  AGG GCAU UAG GCAGU AG       G
                   UACG GGAGCACGGU  UCC CGUA AUC CGUCA UC       C
GUGGACGCUCUGCUUGUAC    U          CU^  U    A   C     -  UAAGAUU 
   120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-17-P2c_5p
mirBase accessionNone
Sequence 
0- UAAGGUGCAUCUAGUGCAGUUAG -23
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Star sequence

Ami-Mir-17-P2c_3p*
mirBase accessionNone
Sequence 
40- UACUGCCCUAAAUGCUCCUUCUGGC -65
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