MirGeneDB 3.0
MirGeneDB ID

Mun-Mir-17-P2c

Family name MIR-17 (all species)
Seed AAGGUGC
Species Microcaecilia (Microcaecilia unicolor)
MiRBase ID
Paralogues Mun-Mir-17-P1a  Mun-Mir-17-P1c  Mun-Mir-17-P2a  Mun-Mir-17-P4a  Mun-Mir-17-P4d 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cja-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Eca-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Laf-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmr-Mir-17-P2c  Mmu-Mir-17-P2c  Neu-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pab-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Mun_miRNA_loci)		 17-P2c_LR594638.1:44966361-44966625: 101-165 [+]
Precursor
(pre-Mir +30nt flank)
GGAAUCUCCAUCUUCACAAAUUUCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGGCGUAGUCUAGAAUCUACUGCCCUAAAUGCUCCUUCUGGCACAAGGGACUUCAUAUACCUCGUGUUUGAU
Get precursor sequence
Structure
        10        20          30          40        50        60 
GGAAUCUCCAUCUUCACAAA-- UU         --|  U    C   U     U  UGGCGUA 
                      U  CUUGUGUUA  AGG GCAU UAG GCAGU AG       G
                      A  GAACACGGU  UCC CGUA AUC CGUCA UC       U
UAGUUUGUGCUCCAUAUACUUC GG         CU^  U    A   C     -  UAAGAUC 
   120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Mun-Mir-17-P2c_5p
mirBase accessionNone
Sequence 
0- UAAGGUGCAUCUAGUGCAGUUAG -23
Get sequence
Star sequence

Mun-Mir-17-P2c_3p* (predicted)
mirBase accessionNone
Sequence 
40- UACUGCCCUAAAUGCUCCUUCUGGC -65
Get sequence