| MirGeneDB ID | Cja-Mir-17-P2c |
|---|---|
| Family name | MIR-17 (all species) |
| Seed | AAGGUGC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-17-P1a Cja-Mir-17-P1c Cja-Mir-17-P1d Cja-Mir-17-P2a Cja-Mir-17-P4a Cja-Mir-17-P4c Cja-Mir-17-P4d |
| Orthologues | Aca-Mir-17-P2c Ami-Mir-17-P2c Bta-Mir-17-P2c Cfa-Mir-17-P2c Cli-Mir-17-P2c Cmi-Mir-17-P2c Cpi-Mir-17-P2c Cpo-Mir-17-P2c Dno-Mir-17-P2c Dre-Mir-17-P2c Eca-Mir-17-P2c Ete-Mir-17-P2c Gga-Mir-17-P2c Gja-Mir-17-P2c Gmo-Mir-17-P2c Hsa-Mir-17-P2c Laf-Mir-17-P2c Lch-Mir-17-P2c Loc-Mir-17-P2c Mdo-Mir-17-P2c Mml-Mir-17-P2c Mmr-Mir-17-P2c Mmu-Mir-17-P2c Mun-Mir-17-P2c Neu-Mir-17-P2c Oan-Mir-17-P2c Ocu-Mir-17-P2c Pab-Mir-17-P2c Pbv-Mir-17-P2c Rno-Mir-17-P2c Sha-Mir-17-P2c Spt-Mir-17-P2c Sto-Mir-17-P2c Tgu-Mir-17-P2c Xla-Mir-17-P2c3 Xla-Mir-17-P2c4 Xtr-Mir-17-P2c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 125647007-125647071 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GAGCUGCUUCUUAUAAUGUGUCUCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAGCAGCUUAGAAUCUACUGCCCUAAAUGCCCCUUCUGGCACAGGCUGCCUCAUAUACAGCAUUUUAAAAGet precursor sequence |
| Structure | 10 20 30 40 50 60 GAGCUGCUUCUUAUAAUGU-- CU --| U C U UA GAAGCA GU CUUGUGUUA AGG GCAU UAG GCAGU GU \ CG GGACACGGU UCC CGUA AUC CGUCA UA G AAAAUUUUACGACAUAUACUC UC CU^ C A C UC AGAUUC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-17-P2c_5p |
| mirBase accession | None |
| Sequence |
0- UAAGGUGCAUCUAGUGCAGUUAGU -24
Get sequence
|
| Star sequence | Cja-Mir-17-P2c_3p* (predicted) |
| mirBase accession | None |
| Sequence |
40- UACUGCCCUAAAUGCCCCUUCUGGC -65
Get sequence
|
