MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-17-P2c

Family name MIR-17 (all species)
Seed AAGGUGC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-17-P1a  Cja-Mir-17-P1c  Cja-Mir-17-P1d  Cja-Mir-17-P2a  Cja-Mir-17-P4a  Cja-Mir-17-P4c  Cja-Mir-17-P4d 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Eca-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Laf-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmr-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Neu-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pab-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 125647007-125647071 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGCUGCUUCUUAUAAUGUGUCUCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAGCAGCUUAGAAUCUACUGCCCUAAAUGCCCCUUCUGGCACAGGCUGCCUCAUAUACAGCAUUUUAAAA
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Structure
        10          20        30          40        50        60 
GAGCUGCUUCUUAUAAUGU--  CU         --|  U    C   U     UA  GAAGCA 
                     GU  CUUGUGUUA  AGG GCAU UAG GCAGU  GU      \
                     CG  GGACACGGU  UCC CGUA AUC CGUCA  UA      G
AAAAUUUUACGACAUAUACUC  UC         CU^  C    A   C     UC  AGAUUC 
   120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cja-Mir-17-P2c_5p
mirBase accessionNone
Sequence 
0- UAAGGUGCAUCUAGUGCAGUUAGU -24
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Star sequence

Cja-Mir-17-P2c_3p* (predicted)
mirBase accessionNone
Sequence 
40- UACUGCCCUAAAUGCCCCUUCUGGC -65
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