Mir-17-P4d

MirGeneDB ID

Cja-Mir-17-P4d

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-17-P1a Cja-Mir-17-P1c Cja-Mir-17-P1d Cja-Mir-17-P2a Cja-Mir-17-P2c Cja-Mir-17-P4a Cja-Mir-17-P4c

Orthologues

Ami-Mir-17-P4d Bta-Mir-17-P4d Cfa-Mir-17-P4d Cmi-Mir-17-P4d Cpi-Mir-17-P4d Cpo-Mir-17-P4d Dno-Mir-17-P4d Dre-Mir-17-P4d Eca-Mir-17-P4d Ete-Mir-17-P4d Gmo-Mir-17-P4d Hsa-Mir-17-P4d Laf-Mir-17-P4d Lch-Mir-17-P4d Loc-Mir-17-P4d Mal-Mir-17-P4d Mdo-Mir-17-P4d Mml-Mir-17-P4d Mmr-Mir-17-P4d Mmu-Mir-17-P4d Mun-Mir-17-P4d Ocu-Mir-17-P4d Pab-Mir-17-P4d Rno-Mir-17-P4d Sha-Mir-17-P4d Tni-Mir-17-P4d Xla-Mir-17-P4d3 Xla-Mir-17-P4d4 Xtr-Mir-17-P4d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021916.1: 11550795-11550856 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCAGUCUUGGACCUCAGUCCUGGGGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGUGAUUACCCAACCUACUGCUGAGCUAGCACUUCCCGAGCCCCCGGGACACGUUCUCUCUGCCAAUUG

Get precursor sequence

Structure

        10          20        30          40        50        60
UCCAGUCUUGGACCUCA--             CA-       -|    U    G   UGUGAU 
                   GUCCUGGGGGCUC   AAGUGCU GUUCG GCAG UAG      U
                   CAGGGCCCCCGAG   UUCACGA CGAGU CGUC AUC      A
GUUAACCGUCUCUCUUGCA             CCC       U^    -    -   CAACCC 
120       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

To

Mature sequence

Cja-Mir-17-P4d_5p

mirBase accession

None

Sequence

0- CAAAGUGCUGUUCGUGCAGGUAG -23

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Star sequence

Cja-Mir-17-P4d_3p*

mirBase accession

None

Sequence

39- ACUGCUGAGCUAGCACUUCCCGA -62

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