MirGeneDB ID | Cja-Mir-17-P4d |
---|---|
Family name | MIR-17 (all species) |
Seed | AAAGUGC |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-17-P1a Cja-Mir-17-P1c Cja-Mir-17-P1d Cja-Mir-17-P2a Cja-Mir-17-P2c Cja-Mir-17-P4a Cja-Mir-17-P4c |
Orthologues | Ami-Mir-17-P4d Bta-Mir-17-P4d Cfa-Mir-17-P4d Cmi-Mir-17-P4d Cpi-Mir-17-P4d Cpo-Mir-17-P4d Dno-Mir-17-P4d Dre-Mir-17-P4d Eca-Mir-17-P4d Ete-Mir-17-P4d Gmo-Mir-17-P4d Hsa-Mir-17-P4d Laf-Mir-17-P4d Lch-Mir-17-P4d Loc-Mir-17-P4d Mal-Mir-17-P4d Mdo-Mir-17-P4d Mml-Mir-17-P4d Mmr-Mir-17-P4d Mmu-Mir-17-P4d Mun-Mir-17-P4d Ocu-Mir-17-P4d Pab-Mir-17-P4d Rno-Mir-17-P4d Sha-Mir-17-P4d Tni-Mir-17-P4d Xla-Mir-17-P4d3 Xla-Mir-17-P4d4 Xtr-Mir-17-P4d |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021916.1: 11550795-11550856 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UCCAGUCUUGGACCUCAGUCCUGGGGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGUGAUUACCCAACCUACUGCUGAGCUAGCACUUCCCGAGCCCCCGGGACACGUUCUCUCUGCCAAUUGGet precursor sequence |
Structure | 10 20 30 40 50 60 UCCAGUCUUGGACCUCA-- CA- -| U G UGUGAU GUCCUGGGGGCUC AAGUGCU GUUCG GCAG UAG U CAGGGCCCCCGAG UUCACGA CGAGU CGUC AUC A GUUAACCGUCUCUCUUGCA CCC U^ - - CAACCC 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | UGUG in loop |
Mature sequence | Cja-Mir-17-P4d_5p |
mirBase accession | None |
Sequence |
0- CAAAGUGCUGUUCGUGCAGGUAG -23
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|
Star sequence | Cja-Mir-17-P4d_3p* |
mirBase accession | None |
Sequence |
39- ACUGCUGAGCUAGCACUUCCCGA -62
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