MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-17-P4d

Family name MIR-17 (all species)
Seed AAAGUGC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-93
Paralogues Ami-Mir-17-P1a  Ami-Mir-17-P1c  Ami-Mir-17-P1d  Ami-Mir-17-P2a  Ami-Mir-17-P2c  Ami-Mir-17-P4a  Ami-Mir-17-P4c 
Orthologues Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cja-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Eca-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Laf-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmr-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Pab-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017707610.1: 16349-16408 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-17-P4d)		 Mir-17-P4d NW_017707610.1: 16349-16408 [-] UCSC
Mir-17-P1d NW_017707610.1: 16544-16603 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CUCUGGGUCCCCCUUGAGCUGCGGUGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGUGUGCAGCCAUCUACUGCCGGGCAGCACUUCCCGAGCCCCCGCAGCCGUACUACCGGACCCAACC
Get precursor sequence
Structure
        10          20        30         40        50          
CUCUGGGUCCCCCUUGA--       U     CA-|           U    G   UGUGUG 
                   GCUGCGG GGCUC   AAGUGCUGUUCG GCAG UAG      \
                   CGACGCC CCGAG   UUCACGACGGGC CGUC AUC      C
CCAACCCAGGCCAUCAUGC       C     CCC^           -    -   UACCGA 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Ami-Mir-17-P4d_5p
mirBase accessionMIMAT0038104
Sequence 
0- CAAAGUGCUGUUCGUGCAGGUAGU -24
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Star sequence

Ami-Mir-17-P4d_3p*
mirBase accessionMIMAT0038105
Sequence 
37- UACUGCCGGGCAGCACUUCCCGA -60
Get sequence