MirGeneDB 3.0

MirGeneDB ID

Ami-Mir-17-P1a

Family name MIR-17 (all species)
Seed AAAGUGC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-17
Paralogues Ami-Mir-17-P1c  Ami-Mir-17-P1d  Ami-Mir-17-P2a  Ami-Mir-17-P2c  Ami-Mir-17-P4a  Ami-Mir-17-P4c  Ami-Mir-17-P4d 
Orthologues Aca-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cja-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Eca-Mir-17-P1a  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Hsa-Mir-17-P1a  Laf-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmr-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Neu-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pab-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xtr-Mir-17-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017709609.1: 10810755-10810815 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-17-P1a)
Mir-92-P1a NW_017709609.1: 10810006-10810064 [-] UCSC
Mir-19-P2a NW_017709609.1: 10810116-10810176 [-] UCSC
Mir-17-P4a NW_017709609.1: 10810252-10810310 [-] UCSC
Mir-19-P1a NW_017709609.1: 10810475-10810532 [-] UCSC
Mir-17-P2a NW_017709609.1: 10810607-10810671 [-] UCSC
Mir-17-P1a NW_017709609.1: 10810755-10810815 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CUGAAGAUCCUGGUCACGUCAGAGUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGAUAUAUAGAACCUACUGCAGUGAAGGCACUUGUAGCAUUAUAGUGACAACUGCCUCAGGACUUCUC
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Structure
        10          20        30         40        50          
CUGAAGAUCCUGGUCAC--    GA       CA-|       A  G     G   UGAUAU 
                   GUCA  GUAAUGU   AAGUGCUU CA UGCAG UAG      \
                   CAGU  UAUUACG   UUCACGGA GU ACGUC AUC      A
CUCUUCAGGACUCCGUCAA    GA       AUG^       A  G     -   CAAGAU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ami-Mir-17-P1a_5p

mirBase accessionMIMAT0038047
Sequence
0- CAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Ami-Mir-17-P1a_3p*

mirBase accessionMIMAT0038048
Sequence
38- ACUGCAGUGAAGGCACUUGUAGC -61
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