MirGeneDB 2.1
MirGeneDB ID

Ami-Mir-17-P4c

Family name MIR-17 (all species)
Seed AAAGUGC
Species American alligator (Alligator mississippiensis)
MiRBase ID
Paralogues Ami-Mir-17-P1a  Ami-Mir-17-P1c  Ami-Mir-17-P1d  Ami-Mir-17-P2a  Ami-Mir-17-P2c  Ami-Mir-17-P4a  Ami-Mir-17-P4d 
Orthologues Aca-Mir-17-P4c  Bta-Mir-17-P4c  Cfa-Mir-17-P4c  Cli-Mir-17-P4c  Cmi-Mir-17-P4c  Cpi-Mir-17-P4c  Cpo-Mir-17-P4c  Dno-Mir-17-P4c  Dre-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gja-Mir-17-P4c  Gmo-Mir-17-P4c  Hsa-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mal-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmu-Mir-17-P4c  Oan-Mir-17-P4c  Ocu-Mir-17-P4c  Pbv-Mir-17-P4c  Rno-Mir-17-P4c  Sha-Mir-17-P4c  Spt-Mir-17-P4c  Sto-Mir-17-P4c  Tgu-Mir-17-P4c  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xtr-Mir-17-P4c 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017711293.1: 2599995-2600056 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GUUUUUUCCUUUUUUUUGUCCUAGCAGUAUCAAAGUGCUCAUAGUGCAGGUAGCUUUUGUAUUGGAUCUACUGUAAUGUGGGCACUUACAGUACUGCCAGAUAAAAUGCAUCGUUGGCCGGU
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Structure
        10        20          30         40        50        60
GUUUUUUCCUUUUUUUUGUC--  A       CA-|          G     G   CUUUUG 
                      CU GCAGUAU   AAGUGCUCAUA UGCAG UAG      U
                      GA CGUCAUG   UUCACGGGUGU AUGUC AUC      A
UGGCCGGUUGCUACGUAAAAUA  C       ACA^          A     -   UAGGUU 
120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-17-P4c_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUCAUAGUGCAGGUAG -23
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Star sequence

Ami-Mir-17-P4c_3p* (predicted)
mirBase accessionNone
Sequence 
39- ACUGUAAUGUGGGCACUUACAGU -62
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