MirGeneDB ID | Spt-Mir-17-P4c |
---|---|
Family name | MIR-17 (all species) |
Seed | AAAGUGC |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | Spt-Mir-17-P1a Spt-Mir-17-P1c Spt-Mir-17-P2a Spt-Mir-17-P2c Spt-Mir-17-P4a |
Orthologues | Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cfa-Mir-17-P4c Cja-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Eca-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Hsa-Mir-17-P4c Laf-Mir-17-P4c Lch-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mml-Mir-17-P4c Mmr-Mir-17-P4c Mmu-Mir-17-P4c Neu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pab-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01011901.1: 25208361-25208422 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GAAUUCGAGCCGAUUUCAUCCUAGCAGUAUCAAAGUGCUCAUAGUGCAGGUAGUUAUUGAACCAGAUCUACUGUAAUGUGGGCACUUACAGUACUGCCAGAAAAAAUGCGUCUUGCUCCCUGGet precursor sequence |
Structure | 10 20 30 40 50 60 GAAUUCGAGCCGAUUUCAUC-- A CA-| G G UUAUUG CU GCAGUAU AAGUGCUCAUA UGCAG UAG A GA CGUCAUG UUCACGGGUGU AUGUC AUC A GUCCCUCGUUCUGCGUAAAAAA C ACA^ A - UAGACC 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Spt-Mir-17-P4c_5p (predicted) |
mirBase accession | None |
Sequence |
0- CAAAGUGCUCAUAGUGCAGGUAG -23
Get sequence
|
Star sequence | Spt-Mir-17-P4c_3p* (predicted) |
mirBase accession | None |
Sequence |
39- ACUGUAAUGUGGGCACUUACAGU -62
Get sequence
|