MirGeneDB 3.0

MirGeneDB ID

Spt-Mir-17-P4c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-17-P1a  Spt-Mir-17-P1c  Spt-Mir-17-P2a  Spt-Mir-17-P2c  Spt-Mir-17-P4a 
Orthologues Aca-Mir-17-P4c  Ami-Mir-17-P4c  Bta-Mir-17-P4c  Cfa-Mir-17-P4c  Cja-Mir-17-P4c  Cli-Mir-17-P4c  Cmi-Mir-17-P4c  Cpi-Mir-17-P4c  Cpo-Mir-17-P4c  Dno-Mir-17-P4c  Dre-Mir-17-P4c  Eca-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gja-Mir-17-P4c  Gmo-Mir-17-P4c  Hsa-Mir-17-P4c  Laf-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mal-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmr-Mir-17-P4c  Mmu-Mir-17-P4c  Neu-Mir-17-P4c  Oan-Mir-17-P4c  Ocu-Mir-17-P4c  Pab-Mir-17-P4c  Pbv-Mir-17-P4c  Rno-Mir-17-P4c  Sha-Mir-17-P4c  Sto-Mir-17-P4c  Tgu-Mir-17-P4c  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xtr-Mir-17-P4c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01011901.1: 25208361-25208422 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAUUCGAGCCGAUUUCAUCCUAGCAGUAUCAAAGUGCUCAUAGUGCAGGUAGUUAUUGAACCAGAUCUACUGUAAUGUGGGCACUUACAGUACUGCCAGAAAAAAUGCGUCUUGCUCCCUG
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Structure
        10        20          30         40        50        60
GAAUUCGAGCCGAUUUCAUC--  A       CA-|          G     G   UUAUUG 
                      CU GCAGUAU   AAGUGCUCAUA UGCAG UAG      A
                      GA CGUCAUG   UUCACGGGUGU AUGUC AUC      A
GUCCCUCGUUCUGCGUAAAAAA  C       ACA^          A     -   UAGACC 
120       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Spt-Mir-17-P4c_5p (predicted)

mirBase accessionNone
Sequence
0- CAAAGUGCUCAUAGUGCAGGUAG -23
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Star sequence

Spt-Mir-17-P4c_3p* (predicted)

mirBase accessionNone
Sequence
39- ACUGUAAUGUGGGCACUUACAGU -62
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