Mir-17-P4c

MirGeneDB ID

Cmi-Mir-17-P4c

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-17-P1a Cmi-Mir-17-P1b Cmi-Mir-17-P1c Cmi-Mir-17-P1d Cmi-Mir-17-P2a Cmi-Mir-17-P2c Cmi-Mir-17-P3b Cmi-Mir-17-P4a Cmi-Mir-17-P4b Cmi-Mir-17-P4d

Orthologues

Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cfa-Mir-17-P4c Cja-Mir-17-P4c Cli-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Eca-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Hsa-Mir-17-P4c Laf-Mir-17-P4c Lch-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mml-Mir-17-P4c Mmr-Mir-17-P4c Mmu-Mir-17-P4c Neu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pab-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Spt-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635856.1: 9595093-9595152 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UACAGGAACAUAAGACUGUCAGUGCAGUACCAAAGUGCUCAUAGUGCAGGUAGUAGCAAUGAAAUCUACUGUAAUGUGAGCACUUACAGUAAUGCCAGACACAAAGCACAGAAAACAGUU

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Structure

        10           20        30         40        50         
UACAGGAACAUAAGACU---|  AGU   G   CA-           G     G   UAGCA 
                    GUC   GCA UAC   AAGUGCUCAUA UGCAG UAG     A
                    CAG   CGU AUG   UUCACGAGUGU AUGUC AUC     U
UUGACAAAAGACACGAAACA^  AC-   A   ACA           A     -   UAAAG 
.       110       100         90        80        70         60

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-17-P4c_5p

mirBase accession

None

Sequence

0- CAAAGUGCUCAUAGUGCAGGUAG -23

Get sequence

Star sequence

Cmi-Mir-17-P4c_3p*

mirBase accession

None

Sequence

37- ACUGUAAUGUGAGCACUUACAGU -60

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