MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-17-P4c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-20b
Paralogues Oan-Mir-17-P1a  Oan-Mir-17-P1c  Oan-Mir-17-P2a  Oan-Mir-17-P2c  Oan-Mir-17-P4a7  Oan-Mir-17-P4a8 
Orthologues Aca-Mir-17-P4c  Ami-Mir-17-P4c  Bta-Mir-17-P4c  Cfa-Mir-17-P4c  Cli-Mir-17-P4c  Cmi-Mir-17-P4c  Cpi-Mir-17-P4c  Cpo-Mir-17-P4c  Dno-Mir-17-P4c  Dre-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gja-Mir-17-P4c  Gmo-Mir-17-P4c  Hsa-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mal-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmu-Mir-17-P4c  Ocu-Mir-17-P4c  Pbv-Mir-17-P4c  Rno-Mir-17-P4c  Sha-Mir-17-P4c  Spt-Mir-17-P4c  Sto-Mir-17-P4c  Tgu-Mir-17-P4c  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xtr-Mir-17-P4c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041733.1: 24650009-24650072 [-]
Clustered miRNAs
(< 50kb from Mir-17-P4c)
Mir-92-P2c NC_041733.1: 24649599-24649663 [-]
Mir-92-P1c NC_041733.1: 24649741-24649802 [-]
Mir-19-P2c NC_041733.1: 24649885-24649944 [-]
Mir-17-P4c NC_041733.1: 24650009-24650072 [-]
Mir-17-P2c NC_041733.1: 24650219-24650283 [-]
Mir-17-P1c NC_041733.1: 24650384-24650441 [-]
Precursor
(pre-Mir +30nt flank)
AUGAUGCUGGAAAUCGUAUCCUGACAGUACCAAAGUGCUCAUAGUGCAGGUAGUUUUUUUCAAUUGAUUCUACUGUAAUGUGGGCACUUACAGUACUCCAGGAUAAAGUGCCACCCAUGUACCG
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Structure
        10           20        30         40        50        60 
AUGAUGCUGGAAAUCGU---|     AC     CA-           G     G   UUUUUUU 
                    AUCCUG  AGUAC   AAGUGCUCAUA UGCAG UAG       C
                    UAGGAC  UCAUG   UUCACGGGUGU AUGUC AUC       A
GCCAUGUACCCACCGUGAAA^     C-     ACA           A     -   UUAGUUA 
  120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-17-P4c_5p

mirBase accessionMIMAT0006853
Sequence
0- CAAAGUGCUCAUAGUGCAGGUAG -23
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Star sequence

Oan-Mir-17-P4c_3p*

mirBase accessionMIMAT0006854
Sequence
41- ACUGUAAUGUGGGCACUUACAGU -64
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