MirGeneDB 3.0

MirGeneDB ID

Oan-Mir-17-P1a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-17
Paralogues Oan-Mir-17-P1c  Oan-Mir-17-P2a  Oan-Mir-17-P2c  Oan-Mir-17-P4a7  Oan-Mir-17-P4a8  Oan-Mir-17-P4c 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cja-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Eca-Mir-17-P1a  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Hsa-Mir-17-P1a  Laf-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmr-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Neu-Mir-17-P1a  Ocu-Mir-17-P1a  Pab-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xtr-Mir-17-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041737.1: 22690068-22690128 [-]
Clustered miRNAs
(< 50kb from Mir-17-P1a)
Mir-92-P1a7 NC_041737.1: 22689293-22689351 [-]
Mir-19-P2a5 NC_041737.1: 22689406-22689466 [-]
Mir-17-P4a7 NC_041737.1: 22689543-22689601 [-]
Mir-19-P1a NC_041737.1: 22689716-22689773 [-]
Mir-17-P1a NC_041737.1: 22690068-22690128 [-]
Precursor
(pre-Mir +30nt flank)
AGACGACAGUAGCCCCCGUCAGAAUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGGUAUGUAGAAUCUACUGCAGUGAAGGCACUUGUAGCAUUAUGUUGACACCUGCCACAGAAAGCCUC
Get precursor sequence
Structure
        10          20        30         40        50          
AGACGACAGUAGCCCCC--     A       CA-|       A  G     G   UGGUAU 
                   GUCAG AUAAUGU   AAGUGCUU CA UGCAG UAG      \
                   CAGUU UAUUACG   UUCACGGA GU ACGUC AUC      G
CUCCGAAAGACACCGUCCA     G       AUG^       A  G     -   UAAGAU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-17-P1a_5p

mirBase accessionMIMAT0007278
Sequence
0- CAAAGUGCUUACAGUGCAGGUAG -23
Get sequence
Star sequence

Oan-Mir-17-P1a_3p*

mirBase accessionMIMAT0007279
Sequence
38- ACUGCAGUGAAGGCACUUGUAGC -61
Get sequence