MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-17-P1a

Family name MIR-17 (all species)
Seed AAAGUGC
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-17-P1c  Laf-Mir-17-P1d  Laf-Mir-17-P2a  Laf-Mir-17-P2c  Laf-Mir-17-P4a  Laf-Mir-17-P4c  Laf-Mir-17-P4d 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cja-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Eca-Mir-17-P1a  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Hsa-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmr-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Neu-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pab-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xtr-Mir-17-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010038.1: 14397164-14397223 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUGAAGAUUGUGACCAGUCAGAAUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGAUUUGUGCAUCUACUGCAGUGAAGGCACUUGUAGCAUUAUGGUGACAGCUGCCUCGGGAAGCCAA
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Structure
        10          20        30         40        50         
ACUGAAGAUUGUGACCA--    GA       CA-|       A  G     G   UGAUU 
                   GUCA  AUAAUGU   AAGUGCUU CA UGCAG UAG     U
                   CAGU  UAUUACG   UUCACGGA GU ACGUC AUC     G
AACCGAAGGGCUCCGUCGA    GG       AUG^       A  G     -   UACGU 
.       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Wh
Mature sequence

Laf-Mir-17-P1a_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Laf-Mir-17-P1a_3p*
mirBase accessionNone
Sequence 
37- ACUGCAGUGAAGGCACUUGUAGC -60
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