Mir-17-P1a

MirGeneDB ID

Xtr-Mir-17-P1a

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-17

Paralogues

Xtr-Mir-17-P1c Xtr-Mir-17-P2a Xtr-Mir-17-P2c Xtr-Mir-17-P4a Xtr-Mir-17-P4c Xtr-Mir-17-P4d

Orthologues

Aca-Mir-17-P1a Ami-Mir-17-P1a Bta-Mir-17-P1a Cfa-Mir-17-P1a Cja-Mir-17-P1a Cli-Mir-17-P1a Cmi-Mir-17-P1a Cpi-Mir-17-P1a Cpo-Mir-17-P1a Dno-Mir-17-P1a Dre-Mir-17-P1a1 Dre-Mir-17-P1a2 Eca-Mir-17-P1a Ete-Mir-17-P1a Gga-Mir-17-P1a Gja-Mir-17-P1a Gmo-Mir-17-P1a1 Gmo-Mir-17-P1a2 Hsa-Mir-17-P1a Laf-Mir-17-P1a Lch-Mir-17-P1a Loc-Mir-17-P1a Mal-Mir-17-P1a1 Mal-Mir-17-P1a2 Mdo-Mir-17-P1a Mml-Mir-17-P1a Mmr-Mir-17-P1a Mmu-Mir-17-P1a Mun-Mir-17-P1a Neu-Mir-17-P1a Oan-Mir-17-P1a Ocu-Mir-17-P1a Pab-Mir-17-P1a Pbv-Mir-17-P1a Rno-Mir-17-P1a Sha-Mir-17-P1a Spt-Mir-17-P1a Sto-Mir-17-P1a Tgu-Mir-17-P1a Tni-Mir-17-P1a1 Tni-Mir-17-P1a2 Xla-Mir-17-P1a3 Xla-Mir-17-P1a4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chr2: 120020393-120020454 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1a)

Mir-92-P1a chr2: 120019748-120019807 [-] UCSC Ensembl
Mir-19-P2a chr2: 120019867-120019928 [-] UCSC Ensembl
Mir-17-P4a chr2: 120019995-120020054 [-] UCSC Ensembl
Mir-19-P1a chr2: 120020122-120020179 [-] UCSC Ensembl
Mir-17-P2a chr2: 120020263-120020327 [-] UCSC Ensembl
Mir-17-P1a chr2: 120020393-120020454 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUGUGUCCAGCUGUUGUCAAGAGUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGAUUUAACAGAACCUACUGCAGUGAAGGCACUUGUAGCAUUAUAUUGACAGUGUUUUCUAGAGGCAAA

Get precursor sequence

Structure

        10           20        30         40        50        60
GCUGUGUCCAGCUGUUG---|   GA       CA-        A  G     G   UGAUUU 
                    UCAA  GUAAUGU   AAGUGCUU CA UGCAG UAG      A
                    AGUU  UAUUACG   UUCACGGA GU ACGUC AUC      A
AAACGGAGAUCUUUUGUGAC^   A-       AUG        A  G     -   CAAGAC 
120       110       100         90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-17-P1a_5p

mirBase accession

MIMAT0003564

Sequence

0- CAAAGUGCUUACAGUGCAGGUAG -23

Get sequence

Proposed targets

TargetScanVert: xtr-miR-17-5p

Star sequence

Xtr-Mir-17-P1a_3p*

mirBase accession

MIMAT0003565

Sequence

39- ACUGCAGUGAAGGCACUUGUAGC -62

Get sequence

Proposed targets

TargetScanVert: xtr-miR-17-3p