MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-17-P4c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-20b
Paralogues Xtr-Mir-17-P1a  Xtr-Mir-17-P1c  Xtr-Mir-17-P2a  Xtr-Mir-17-P2c  Xtr-Mir-17-P4a  Xtr-Mir-17-P4d 
Orthologues Aca-Mir-17-P4c  Ami-Mir-17-P4c  Bta-Mir-17-P4c  Cfa-Mir-17-P4c  Cli-Mir-17-P4c  Cmi-Mir-17-P4c  Cpi-Mir-17-P4c  Cpo-Mir-17-P4c  Dno-Mir-17-P4c  Dre-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gja-Mir-17-P4c  Gmo-Mir-17-P4c  Hsa-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mal-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmu-Mir-17-P4c  Oan-Mir-17-P4c  Ocu-Mir-17-P4c  Pbv-Mir-17-P4c  Rno-Mir-17-P4c  Sha-Mir-17-P4c  Spt-Mir-17-P4c  Sto-Mir-17-P4c  Tgu-Mir-17-P4c  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr8: 47197940-47198000 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4c)
Mir-92-P2c chr8: 47197567-47197631 [-] UCSC Ensembl
Mir-92-P1c chr8: 47197697-47197755 [-] UCSC Ensembl
Mir-19-P2c chr8: 47197828-47197884 [-] UCSC Ensembl
Mir-17-P4c chr8: 47197940-47198000 [-] UCSC Ensembl
Mir-17-P2c chr8: 47198097-47198161 [-] UCSC Ensembl
Mir-17-P1c chr8: 47198222-47198278 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAUUGGCAAGUGCUCUGUCAAAGCAGUUCCAAAGUGCUCAUAGUGCAGGUAGUUGUAUUGAUGUUCUACUGUAAUAUGGGCACUUACAGUACUGCUAGACAAUAUUCAUCUCCUCGCUUG
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Structure
        10           20        30         40        50          
GGAUUGGCAAGUGCUCU---|  AA      UCCA-           G     G   UUGUAU 
                    GUC  AGCAGU     AAGUGCUCAUA UGCAG UAG      \
                    CAG  UCGUCA     UUCACGGGUAU AUGUC AUC      U
GUUCGCUCCUCUACUUAUAA^  A-      UGACA           A     -   UUGUAG 
 .       110       100         90        80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-17-P4c_5p

mirBase accessionMIMAT0003707
Sequence
0- CAAAGUGCUCAUAGUGCAGGUAG -23
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Proposed targets TargetScanVert: xtr-miR-20b
Star sequence

Xtr-Mir-17-P4c_3p*

mirBase accessionNone
Sequence
38- ACUGUAAUAUGGGCACUUACAGU -61
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