Mir-92-P2c

MirGeneDB ID

Xtr-Mir-92-P2c

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-363

Paralogues

Xtr-Mir-92-P1a Xtr-Mir-92-P1c Xtr-Mir-92-P1d Xtr-Mir-92-P2a Xtr-Mir-92-P2d

Orthologues

Aca-Mir-92-P2c Ami-Mir-92-P2c Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2c Cel-Mir-92 Cfa-Mir-92-P2c Cja-Mir-92-P2c Cli-Mir-92-P2c Cmi-Mir-92-P2c Cpi-Mir-92-P2c Cpo-Mir-92-P2c Dno-Mir-92-P2c Dre-Mir-92-P2c Eca-Mir-92-P2c Esc-Mir-92 Ete-Mir-92-P2c Gga-Mir-92-P2c Gja-Mir-92-P2c Gmo-Mir-92-P2c Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2c Isc-Mir-92 Laf-Mir-92-P2c Lch-Mir-92-P2c Loc-Mir-92-P2c Mdo-Mir-92-P2c Mml-Mir-92-P2c Mmr-Mir-92-P2c Mmu-Mir-92-P2c Mun-Mir-92-P2c Neu-Mir-92-P2c Oan-Mir-92-P2c Obi-Mir-92 Ocu-Mir-92-P2c Pab-Mir-92-P2c Pbv-Mir-92-P2c Rno-Mir-92-P2c Sha-Mir-92-P2c Sme-Mir-92 Spt-Mir-92-P2c Sto-Mir-92-P2c Tgu-Mir-92-P2c Xla-Mir-92-P2c3 Xla-Mir-92-P2c4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr8: 47197567-47197631 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2c)

Mir-92-P2c chr8: 47197567-47197631 [-] UCSC Ensembl
Mir-92-P1c chr8: 47197697-47197755 [-] UCSC Ensembl
Mir-19-P2c chr8: 47197828-47197884 [-] UCSC Ensembl
Mir-17-P4c chr8: 47197940-47198000 [-] UCSC Ensembl
Mir-17-P2c chr8: 47198097-47198161 [-] UCSC Ensembl
Mir-17-P1c chr8: 47198222-47198278 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAGUAGUAGUGUAAAUUGUUUUGUUGUUCGCGGGUGGAUCACGAUGCAAUUUUAUUUAGUUUGGUAGGAGAAAAAUUGCACGGUAUCCAUCUGUAAACCGCAGAAUGCCUGUGCAAUUUAUAGGU

Get precursor sequence

Structure

        10          20        30        40        50        60  
UAGUAGUAGUGUAAAUU--|      U   CG         CA  A         AUUUAGUU 
                   GUUUUGU GUU  CGGGUGGAU  CG UGCAAUUUU        U
                   UAAGACG CAA  GUCUACCUA  GC ACGUUAAAA        G
UGGAUAUUUAACGUGUCCG^      C   AU         UG  -         AGAGGAUG 
   120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

An	Br	Em	Em	He	Ve

Star sequence

Xtr-Mir-92-P2c_5p*

mirBase accession

MIMAT0003701

Sequence

0- CGGGUGGAUCACGAUGCAAUUUU -23

Get sequence

Proposed targets

TargetScanVert: xtr-miR-363-5p

Mature sequence

Xtr-Mir-92-P2c_3p

mirBase accession

MIMAT0003702

Sequence

43- AAUUGCACGGUAUCCAUCUGUA -65

Get sequence

Proposed targets

TargetScanVert: xtr-miR-363-3p