MirGeneDB 2.1

MirGeneDB ID

Spt-Mir-92-P2c

Family name MIR-92 (all species)
Seed AUUGCAC
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-92-P1a  Spt-Mir-92-P1c  Spt-Mir-92-P1d  Spt-Mir-92-P2a 
Orthologues Aca-Mir-92-P2c  Ami-Mir-92-P2c  Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2c  Cel-Mir-92  Cfa-Mir-92-P2c  Cli-Mir-92-P2c  Cmi-Mir-92-P2c  Cpi-Mir-92-P2c  Cpo-Mir-92-P2c  Dno-Mir-92-P2c  Dre-Mir-92-P2c  Esc-Mir-92  Ete-Mir-92-P2c  Gga-Mir-92-P2c  Gja-Mir-92-P2c  Gmo-Mir-92-P2c  Hsa-Mir-92-P2c  Isc-Mir-92  Lch-Mir-92-P2c  Loc-Mir-92-P2c  Mdo-Mir-92-P2c  Mml-Mir-92-P2c  Mmu-Mir-92-P2c  Mun-Mir-92-P2c  Oan-Mir-92-P2c  Obi-Mir-92  Ocu-Mir-92-P2c  Pbv-Mir-92-P2c  Rno-Mir-92-P2c  Sha-Mir-92-P2c  Sme-Mir-92  Sto-Mir-92-P2c  Tgu-Mir-92-P2c  Xla-Mir-92-P2c3  Xla-Mir-92-P2c4  Xtr-Mir-92-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01011901.1: 25208800-25208864 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCGCGGUAAAGCUCUUGUUUUGCUGUUGUCGGGUGGAUCACGAUGCAAUUUUGAUUAGUUUAGAAGGAGAAAAAUUGCACGGUAUCCAUCUGUAAACCGCAGGACCUUCAUCGCUGACAAUGUC
Get precursor sequence
Structure
        10          20        30        40        50        60  
UGCGCGGUAAAGCUCUU--|      U   GU         CA  A         GAUUAGUU 
                   GUUUUGC GUU  CGGGUGGAU  CG UGCAAUUUU        U
                   CAGGACG CAA  GUCUACCUA  GC ACGUUAAAA        A
CUGUAACAGUCGCUACUUC^      C   AU         UG  -         AGAGGAAG 
   120       110       100        90         80        70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14)
Star sequence

Spt-Mir-92-P2c_5p* (predicted)

mirBase accessionNone
Sequence
0- CGGGUGGAUCACGAUGCAAUUUU -23
Get sequence
Mature sequence

Spt-Mir-92-P2c_3p (predicted)

mirBase accessionNone
Sequence
43- AAUUGCACGGUAUCCAUCUGUA -65
Get sequence