MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-17-P2c

Family name MIR-17 (all species)
Seed AAGGUGC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-18b
Paralogues Xtr-Mir-17-P1a  Xtr-Mir-17-P1c  Xtr-Mir-17-P2a  Xtr-Mir-17-P4a  Xtr-Mir-17-P4c  Xtr-Mir-17-P4d 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cja-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Eca-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Laf-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmr-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Neu-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pab-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr8: 47198097-47198161 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2c)
Mir-92-P2c chr8: 47197567-47197631 [-] UCSC Ensembl
Mir-92-P1c chr8: 47197697-47197755 [-] UCSC Ensembl
Mir-19-P2c chr8: 47197828-47197884 [-] UCSC Ensembl
Mir-17-P4c chr8: 47197940-47198000 [-] UCSC Ensembl
Mir-17-P2c chr8: 47198097-47198161 [-] UCSC Ensembl
Mir-17-P1c chr8: 47198222-47198278 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGACACCUGUACUCGCUCGUCUCCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGACAUAGUGUAGCAUCUACUGCCCUAAAUGCUCCUUUUGGCACAGGUUGUUUCACGAUCAUCUCUUGACUU
Get precursor sequence
Structure
        10        20          30          40        50        60 
GGACACCUGUACUCGCUCGUCUC--         --|  U    C   U     U  UGACAUA 
                         CUUGUGUUA  AGG GCAU UAG GCAGU AG       G
                         GGACACGGU  UCC CGUA AUC CGUCA UC       U
UUCAGUUCUCUACUAGCACUUUGUU         UU^  U    A   C     -  UACGAUG 
   120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-17-P2c_5p

mirBase accessionMIMAT0003706
Sequence
0- UAAGGUGCAUCUAGUGCAGUUAG -23
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Proposed targets TargetScanVert: xtr-miR-18b
Star sequence

Xtr-Mir-17-P2c_3p* (predicted)

mirBase accessionNone
Sequence
41- ACUGCCCUAAAUGCUCCUUUUGGC -65
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