MirGeneDB 2.1
MirGeneDB ID

Cmi-Mir-17-P2c

Family name MIR-17 (all species)
Seed AAGGUGC
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-17-P1a  Cmi-Mir-17-P1b  Cmi-Mir-17-P1c  Cmi-Mir-17-P1d  Cmi-Mir-17-P2a  Cmi-Mir-17-P3b  Cmi-Mir-17-P4a  Cmi-Mir-17-P4b  Cmi-Mir-17-P4c  Cmi-Mir-17-P4d 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cli-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635856.1: 9595761-9595825 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCUAAGUUUUCUAAUGUACUCCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAGUAGCUUAGAAUCUACUGCCCUAAGUGUUCCUUCUGGCACAAGCUGUUACACCGACAACUCAGGAAUU
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Structure
        10          20        30          40        50        60 
UUUCUAAGUUUUCUAAU-  -  UC         --|  U   UC   U     U  UGAAGUA 
                  GU AC  CUUGUGUUA  AGG GCA  UAG GCAGU AG       G
                  CA UG  GAACACGGU  UCC UGU  AUC CGUCA UC       C
UUAAGGACUCAACAGCCA  U  UC         CU^  U   GA   C     -  UAAGAUU 
   120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Mir-17-P2c_5p
mirBase accessionNone
Sequence 
0- UAAGGUGCAUCUAGUGCAGUUAG -23
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Star sequence

Cmi-Mir-17-P2c_3p*
mirBase accessionNone
Sequence 
40- UACUGCCCUAAGUGUUCCUUCUGGC -65
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