Mir-17-P2c

MirGeneDB ID

Cmi-Mir-17-P2c

Family name

MIR-17 (all species)

Seed

AAGGUGC

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-17-P1a Cmi-Mir-17-P1b Cmi-Mir-17-P1c Cmi-Mir-17-P1d Cmi-Mir-17-P2a Cmi-Mir-17-P3b Cmi-Mir-17-P4a Cmi-Mir-17-P4b Cmi-Mir-17-P4c Cmi-Mir-17-P4d

Orthologues

Aca-Mir-17-P2c Ami-Mir-17-P2c Bta-Mir-17-P2c Cfa-Mir-17-P2c Cja-Mir-17-P2c Cli-Mir-17-P2c Cpi-Mir-17-P2c Cpo-Mir-17-P2c Dno-Mir-17-P2c Dre-Mir-17-P2c Eca-Mir-17-P2c Ete-Mir-17-P2c Gga-Mir-17-P2c Gja-Mir-17-P2c Gmo-Mir-17-P2c Hsa-Mir-17-P2c Laf-Mir-17-P2c Lch-Mir-17-P2c Loc-Mir-17-P2c Mdo-Mir-17-P2c Mml-Mir-17-P2c Mmr-Mir-17-P2c Mmu-Mir-17-P2c Mun-Mir-17-P2c Neu-Mir-17-P2c Oan-Mir-17-P2c Ocu-Mir-17-P2c Pab-Mir-17-P2c Pbv-Mir-17-P2c Rno-Mir-17-P2c Sha-Mir-17-P2c Spt-Mir-17-P2c Sto-Mir-17-P2c Tgu-Mir-17-P2c Xla-Mir-17-P2c3 Xla-Mir-17-P2c4 Xtr-Mir-17-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635856.1: 9595761-9595825 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUCUAAGUUUUCUAAUGUACUCCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAGUAGCUUAGAAUCUACUGCCCUAAGUGUUCCUUCUGGCACAAGCUGUUACACCGACAACUCAGGAAUU

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Structure

        10          20        30          40        50        60 
UUUCUAAGUUUUCUAAU-  -  UC         --|  U   UC   U     U  UGAAGUA 
                  GU AC  CUUGUGUUA  AGG GCA  UAG GCAGU AG       G
                  CA UG  GAACACGGU  UCC UGU  AUC CGUCA UC       C
UUAAGGACUCAACAGCCA  U  UC         CU^  U   GA   C     -  UAAGAUU 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-17-P2c_5p

mirBase accession

None

Sequence

0- UAAGGUGCAUCUAGUGCAGUUAG -23

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Star sequence

Cmi-Mir-17-P2c_3p*

mirBase accession

None

Sequence

40- UACUGCCCUAAGUGUUCCUUCUGGC -65

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