MirGeneDB 3.0

MirGeneDB ID

Pbv-Mir-17-P2c

Family name MIR-17 (all species)
Seed AAGGUGC
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-18b
Paralogues Pbv-Mir-17-P1a  Pbv-Mir-17-P1c  Pbv-Mir-17-P2a  Pbv-Mir-17-P4a  Pbv-Mir-17-P4c 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cja-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Eca-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Laf-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmr-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Neu-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pab-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE958055.1: 3575-3639 [-]
Clustered miRNAs
(< 50kb from Mir-17-P2c)
Mir-92-P2c KE958055.1: 115-179 [-]
Mir-92-P1c KE958055.1: 286-347 [-]
Mir-17-P4c KE958055.1: 600-662 [-]
Mir-17-P2c KE958055.1: 3575-3639 [-]
Mir-17-P1c KE958055.1: 3752-3809 [-]
Precursor
(pre-Mir +30nt flank)
CCCAGCUGGGAGGCCGGAAGUUUCUUGUGCUAAGGUGCAUCUAGUGCAGUUAGUGAACUAGCUUAGACUCUACUGCCCUGAGUGCUCCUUCUGGCACACGGAGCUGAAGAUGGUGAGGCUUUGCU
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Structure
        10          20        30          40        50        60 
CCCAGCUGGGAGGCCGGA--      U       --|  U   UC   U     U  UGAACUA 
                    AGUUUC UGUGCUA  AGG GCA  UAG GCAGU AG       G
                    UCGAGG ACACGGU  UCC CGU  GUC CGUCA UC       C
UCGUUUCGGAGUGGUAGAAG      C       CU^  U   GA   C     -  UCAGAUU 
   120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Mature sequence

Pbv-Mir-17-P2c_5p

mirBase accessionMIMAT0038842
Sequence
0- UAAGGUGCAUCUAGUGCAGUUAG -23
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Star sequence

Pbv-Mir-17-P2c_3p* (predicted)

mirBase accessionNone
Sequence
41- ACUGCCCUGAGUGCUCCUUCUGGC -65
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