MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-17-P2c

Family name MIR-17 (all species)
Seed AAGGUGC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-18b
Paralogues Cpo-Mir-17-P1a  Cpo-Mir-17-P1c  Cpo-Mir-17-P1d  Cpo-Mir-17-P2a  Cpo-Mir-17-P4a  Cpo-Mir-17-P4c  Cpo-Mir-17-P4d 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)
scaffold_128: 2512897-2512961 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-17-P2c)
Mir-92-P2c scaffold_128: 2512251-2512315 [-] UCSC
Mir-92-P1c scaffold_128: 2512411-2512471 [-] UCSC
Mir-19-P2c scaffold_128: 2512548-2512615 [-] UCSC
Mir-17-P4c scaffold_128: 2512679-2512739 [-] UCSC
Mir-17-P2c scaffold_128: 2512897-2512961 [-] UCSC
Mir-17-P1c scaffold_128: 2513060-2513118 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UUUGGGCUGCCCUGUAAGUGUCUCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAGCAGCUUAGAAUCUACUGCCCUAAAUGCCCCUUCUGGCACAGGCUGCCUAAUUUACAGCAUUAAAAAA
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Structure
        10           20        30          40        50        60 
UUUGGGCUGCCCUGUAA--- U  CU         --|  U    C   U     U  UGAAGCA 
                    G GU  CUUGUGUUA  AGG GCAU UAG GCAGU AG       G
                    C CG  GGACACGGU  UCC CGUA AUC CGUCA UC       C
AAAAAAUUACGACAUUUAAU -  UC         CU^  C    A   C     -  UAAGAUU 
   120       110        100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Cpo-Mir-17-P2c_5p

mirBase accessionMIMAT0046861
Sequence
0- UAAGGUGCAUCUAGUGCAGUUAG -23
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Star sequence

Cpo-Mir-17-P2c_3p* (predicted)

mirBase accessionMIMAT0046862
Sequence
40- UACUGCCCUAAAUGCCCCUUCUGGC -65
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