Mir-17-P1c

MirGeneDB ID

Cpo-Mir-17-P1c

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-106a

Paralogues

Cpo-Mir-17-P1a Cpo-Mir-17-P1d Cpo-Mir-17-P2a Cpo-Mir-17-P2c Cpo-Mir-17-P4a Cpo-Mir-17-P4c Cpo-Mir-17-P4d

Orthologues

Aca-Mir-17-P1c Ami-Mir-17-P1c Bta-Mir-17-P1c Cfa-Mir-17-P1c Cja-Mir-17-P1c Cli-Mir-17-P1c Cmi-Mir-17-P1c Cpi-Mir-17-P1c Dno-Mir-17-P1c Eca-Mir-17-P1c Ete-Mir-17-P1c Gga-Mir-17-P1c Gja-Mir-17-P1c Hsa-Mir-17-P1c Laf-Mir-17-P1c Lch-Mir-17-P1c Loc-Mir-17-P1c Mdo-Mir-17-P1c Mml-Mir-17-P1c Mmr-Mir-17-P1c Mmu-Mir-17-P1c Mun-Mir-17-P1c Neu-Mir-17-P1c Oan-Mir-17-P1c Ocu-Mir-17-P1c Pab-Mir-17-P1c Pbv-Mir-17-P1c Rno-Mir-17-P1c Sha-Mir-17-P1c Spt-Mir-17-P1c Sto-Mir-17-P1c Tgu-Mir-17-P1c Xla-Mir-17-P1c3 Xla-Mir-17-P1c4 Xtr-Mir-17-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(cavPor3)

scaffold_128: 2513060-2513118 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-17-P1c)

Mir-92-P2c scaffold_128: 2512251-2512315 [-] UCSC
Mir-92-P1c scaffold_128: 2512411-2512471 [-] UCSC
Mir-19-P2c scaffold_128: 2512548-2512615 [-] UCSC
Mir-17-P4c scaffold_128: 2512679-2512739 [-] UCSC
Mir-17-P2c scaffold_128: 2512897-2512961 [-] UCSC
Mir-17-P1c scaffold_128: 2513060-2513118 [-] UCSC

Precursor
(pre-Mir +30nt flank)

UUAUGCUUCAGGAAUAGGCCUUGGCCAUGUAAAAGUGCUUACAGUGCAGGUAGCUUUUUAAGAUCUACUGCAAUGCAAGCACUUCUUACAUUACCAUGGUGAUUUAAUCAGUGGCUACU

Get precursor sequence

Structure

        10          20        30         40        50         
UUAUGCUUCAGGAAUAG--   U   CC      -|       A  G     G   CUUUU 
                   GCC UGG  AUGUAA AAGUGCUU CA UGCAG UAG     \
                   UGG ACC  UACAUU UUCACGAA GU ACGUC AUC     U
UCAUCGGUGACUAAUUUAG   U   AU      C^       C  A     -   UAGAA 
       110       100        90        80        70         60