Mir-17-P1c

MirGeneDB ID

Cmi-Mir-17-P1c

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-17-P1a Cmi-Mir-17-P1b Cmi-Mir-17-P1d Cmi-Mir-17-P2a Cmi-Mir-17-P2c Cmi-Mir-17-P3b Cmi-Mir-17-P4a Cmi-Mir-17-P4b Cmi-Mir-17-P4c Cmi-Mir-17-P4d

Orthologues

Aca-Mir-17-P1c Ami-Mir-17-P1c Bta-Mir-17-P1c Cfa-Mir-17-P1c Cja-Mir-17-P1c Cli-Mir-17-P1c Cpi-Mir-17-P1c Cpo-Mir-17-P1c Dno-Mir-17-P1c Eca-Mir-17-P1c Ete-Mir-17-P1c Gga-Mir-17-P1c Gja-Mir-17-P1c Hsa-Mir-17-P1c Laf-Mir-17-P1c Lch-Mir-17-P1c Loc-Mir-17-P1c Mdo-Mir-17-P1c Mml-Mir-17-P1c Mmr-Mir-17-P1c Mmu-Mir-17-P1c Mun-Mir-17-P1c Neu-Mir-17-P1c Oan-Mir-17-P1c Ocu-Mir-17-P1c Pab-Mir-17-P1c Pbv-Mir-17-P1c Rno-Mir-17-P1c Sha-Mir-17-P1c Spt-Mir-17-P1c Sto-Mir-17-P1c Tgu-Mir-17-P1c Xla-Mir-17-P1c3 Xla-Mir-17-P1c4 Xtr-Mir-17-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635856.1: 9595929-9595986 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUUGAAUUGUGGAUUUGGCCAAGUUGUGCAAAAGUGCUUACAGUGCAGGUAGCAGUCAACAUCUACUGCAGUGCAAGCACUUCUCGCAUUACCUUGGCAGAUAUUUUAAUGAUAACU

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Structure

        10         20         30         40        50        
GCUUGAAUUGUGGAUUUG-      UU-    AA-|       A  G     G   CAGU 
                   GCCAAG   GUGC   AAGUGCUU CA UGCAG UAG    C
                   CGGUUC   UACG   UUCACGAA GU ACGUC AUC    A
UCAAUAGUAAUUUUAUAGA      CAU    CUC^       C  G     -   UACA 
      110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-17-P1c_5p

mirBase accession

None

Sequence

0- AAAAGUGCUUACAGUGCAGGUAG -23

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Star sequence

Cmi-Mir-17-P1c_3p*

mirBase accession

None

Sequence

35- ACUGCAGUGCAAGCACUUCUCGC -58

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