Mir-17-P1c

MirGeneDB ID

Gga-Mir-17-P1c

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-106

Paralogues

Gga-Mir-17-P1a Gga-Mir-17-P2a Gga-Mir-17-P2c Gga-Mir-17-P4a Gga-Mir-17-P4c

Orthologues

Aca-Mir-17-P1c Ami-Mir-17-P1c Bta-Mir-17-P1c Cfa-Mir-17-P1c Cja-Mir-17-P1c Cli-Mir-17-P1c Cmi-Mir-17-P1c Cpi-Mir-17-P1c Cpo-Mir-17-P1c Dno-Mir-17-P1c Eca-Mir-17-P1c Ete-Mir-17-P1c Gja-Mir-17-P1c Hsa-Mir-17-P1c Laf-Mir-17-P1c Lch-Mir-17-P1c Loc-Mir-17-P1c Mdo-Mir-17-P1c Mml-Mir-17-P1c Mmr-Mir-17-P1c Mmu-Mir-17-P1c Mun-Mir-17-P1c Neu-Mir-17-P1c Oan-Mir-17-P1c Ocu-Mir-17-P1c Pab-Mir-17-P1c Pbv-Mir-17-P1c Rno-Mir-17-P1c Sha-Mir-17-P1c Spt-Mir-17-P1c Sto-Mir-17-P1c Tgu-Mir-17-P1c Xla-Mir-17-P1c3 Xla-Mir-17-P1c4 Xtr-Mir-17-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

4: 3967949-3968006 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1c)

Mir-92-P2c 4: 3967217-3967281 [-] UCSC Ensembl
Mir-92-P1c 4: 3967357-3967418 [-] UCSC Ensembl
Mir-19-P2c 4: 3967505-3967564 [-] UCSC Ensembl
Mir-17-P4c 4: 3967641-3967701 [-] UCSC Ensembl
Mir-17-P2c 4: 3967813-3967877 [-] UCSC Ensembl
Mir-17-P1c 4: 3967949-3968006 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GACCCUCUGCCGAUGGGCCUUGAGUUGUGCAAAAGUGCUUACAGUGCAGGUAGAGCUCAGCACCUACUGCAGUAUAAGCACUUCUGGCAUGACCGUGGCGAUGCGGCACUGGAGCACG

Get precursor sequence

Structure

        10           20        30         40        50        
GACCCUCUGCCGAUGGG---| U  A  UG   AA-         CAG     G   AGCU 
                    CC UG GU  UGC   AAGUGCUUA   UGCAG UAG    C
                    GG GC CA  ACG   UUCACGAAU   ACGUC AUC    A
GCACGAGGUCACGGCGUAGC^ U  -  GU   GUC         AUG     -   CACG 
      110       100         90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-17-P1c_5p

mirBase accession

MIMAT0001142

Sequence

0- AAAAGUGCUUACAGUGCAGGUAG -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-106-5p
miRDB: MIMAT0001142

Star sequence

Gga-Mir-17-P1c_3p*

mirBase accession

MIMAT0026517

Sequence

35- ACUGCAGUAUAAGCACUUCUGGC -58

Get sequence

Proposed targets

TargetScanVert: gga-miR-106-3p
miRDB: MIMAT0026517