MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-17-P1d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-106b
Paralogues Cpo-Mir-17-P1a  Cpo-Mir-17-P1c  Cpo-Mir-17-P2a  Cpo-Mir-17-P2c  Cpo-Mir-17-P4a  Cpo-Mir-17-P4c  Cpo-Mir-17-P4d 
Orthologues Ami-Mir-17-P1d  Bta-Mir-17-P1d  Cfa-Mir-17-P1d  Cja-Mir-17-P1d  Cmi-Mir-17-P1d  Cpi-Mir-17-P1d  Dno-Mir-17-P1d  Eca-Mir-17-P1d  Ete-Mir-17-P1d  Gmo-Mir-17-P1d  Hsa-Mir-17-P1d  Laf-Mir-17-P1d  Lch-Mir-17-P1d  Loc-Mir-17-P1d  Mal-Mir-17-P1d  Mml-Mir-17-P1d  Mmr-Mir-17-P1d  Mmu-Mir-17-P1d  Ocu-Mir-17-P1d  Pab-Mir-17-P1d  Rno-Mir-17-P1d  Sto-Mir-17-P1d  Tni-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_30: 4035937-4035998 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-17-P1d)		 Mir-17-P1d scaffold_30: 4035937-4035998 [+] UCSC
Mir-17-P4d scaffold_30: 4036154-4036215 [+] UCSC
Mir-92-P2d scaffold_30: 4036356-4036415 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CCACCUCCCUCUCACUGGCCCUGCCGGGGCUAAAGUGCUGACAGUGCAGAUAGUGGUCCUCUCUGUGCUACCGCACUGUGGGUACUUGCUGCUCCAGCAGGGCAUGCACAGCGCCCAUGGAG
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Structure
        10          20        30         40        50          
CCACCUCCCUCUCACUG--       C     UA-|      G       AGAUAGUGGUCC 
                   GCCCUGC GGGGC   AAGUGCU ACAGUGC            \
                   CGGGACG CCUCG   UUCAUGG UGUCACG            U
GAGGUACCCGCGACACGUA       A     UCG^      G       CCAUCGUGUCUC 
120       110       100        90        80        70
Deep sequencing
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CommentThere are Dicer cuts +1 and +2.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-17-P1d_5p
mirBase accessionMIMAT0046957
Sequence 
0- UAAAGUGCUGACAGUGCAGAUA -22
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Co-mature sequence

Cpo-Mir-17-P1d_3p
mirBase accessionMIMAT0046958
Sequence 
40- CCGCACUGUGGGUACUUGCUGC -62
Get sequence