MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-17-P1d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-17-P1a  Sto-Mir-17-P1b  Sto-Mir-17-P1c  Sto-Mir-17-P2a  Sto-Mir-17-P2c  Sto-Mir-17-P3b  Sto-Mir-17-P4a  Sto-Mir-17-P4b  Sto-Mir-17-P4c 
Orthologues Ami-Mir-17-P1d  Bta-Mir-17-P1d  Cfa-Mir-17-P1d  Cja-Mir-17-P1d  Cmi-Mir-17-P1d  Cpi-Mir-17-P1d  Cpo-Mir-17-P1d  Dno-Mir-17-P1d  Eca-Mir-17-P1d  Ete-Mir-17-P1d  Gmo-Mir-17-P1d  Hsa-Mir-17-P1d  Laf-Mir-17-P1d  Lch-Mir-17-P1d  Loc-Mir-17-P1d  Mal-Mir-17-P1d  Mml-Mir-17-P1d  Mmr-Mir-17-P1d  Mmu-Mir-17-P1d  Ocu-Mir-17-P1d  Pab-Mir-17-P1d  Rno-Mir-17-P1d  Tni-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01019261.1: 16781-16841 [+]
Precursor
(pre-Mir +30nt flank)
UCCAGUCCCCGGGCCGGGCUGUGUCAGUGCUAAAGUGCUGACAGUGCAGGUAGUGAGACUGAAUACCUACUGUACUGGGUGCACUUGGAGCACUGUCCCAGCCAAUCCCUACGCCUGGGUU
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Structure
        10          20        30         40        50          
UCCAGUCCCCGGGCCGG--    UGU       A-|     UGA        G   UGAGAC 
                   GCUG   CAGUGCU  AAGUGC   CAGUGCAG UAG      \
                   CGAC   GUCACGA  UUCACG   GUCAUGUC AUC      U
UUGGGUCCGCAUCCCUAAC    CCU       GG^     UGG        -   CAUAAG 
 .       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Sto-Mir-17-P1d_5p
mirBase accessionNone
Sequence 
0- UAAAGUGCUGACAGUGCAGGUAG -23
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Star sequence

Sto-Mir-17-P1d_3p* (predicted)
mirBase accessionNone
Sequence 
39- CUGUACUGGGUGCACUUGGAGC -61
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