Mir-17-P1d

MirGeneDB ID

Eca-Mir-17-P1d

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-106b

Paralogues

Eca-Mir-17-P1a Eca-Mir-17-P1c Eca-Mir-17-P2a Eca-Mir-17-P2c Eca-Mir-17-P4a Eca-Mir-17-P4c Eca-Mir-17-P4d

Orthologues

Ami-Mir-17-P1d Bta-Mir-17-P1d Cfa-Mir-17-P1d Cja-Mir-17-P1d Cmi-Mir-17-P1d Cpi-Mir-17-P1d Cpo-Mir-17-P1d Dno-Mir-17-P1d Ete-Mir-17-P1d Gmo-Mir-17-P1d Hsa-Mir-17-P1d Laf-Mir-17-P1d Lch-Mir-17-P1d Loc-Mir-17-P1d Mal-Mir-17-P1d Mml-Mir-17-P1d Mmr-Mir-17-P1d Mmu-Mir-17-P1d Ocu-Mir-17-P1d Pab-Mir-17-P1d Rno-Mir-17-P1d Sto-Mir-17-P1d Tni-Mir-17-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009160.1: 8115356-8115417 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1d)

Mir-92-P2d CM009160.1: 8114925-8114984 [-] UCSC Ensembl
Mir-17-P4d CM009160.1: 8115130-8115191 [-] UCSC Ensembl
Mir-17-P1d CM009160.1: 8115356-8115417 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCUCCCUCCCACUCAGGCCCUGCCGGGGCUAAAGUGCUGACAGUGCAGAUAGUGGUCCUCUCCAUGCUACCGCACUGUGGGUACUUGCUGCUCCAGUAGGGCACGCACAGCGUCCCUGGAG

Get precursor sequence

Structure

        10          20        30         40        50          
UCCUCCCUCCCACUCAG--       C     UA-|      G       AGAUAGUGGUCC 
                   GCCCUGC GGGGC   AAGUGCU ACAGUGC            \
                   CGGGAUG CCUCG   UUCAUGG UGUCACG            U
GAGGUCCCUGCGACACGCA       A     UCG^      G       CCAUCGUACCUC 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

There are Dicer cuts +1 and +2 on both arms.

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-17-P1d_5p

mirBase accession

MIMAT0013054

Sequence

0- UAAAGUGCUGACAGUGCAGAU -21

Get sequence

Star sequence

Eca-Mir-17-P1d_3p*

mirBase accession

None

Sequence

40- CCGCACUGUGGGUACUUGCUGC -62

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