MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-17-P1d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-106b
Paralogues Ocu-Mir-17-P1a  Ocu-Mir-17-P1c  Ocu-Mir-17-P2a  Ocu-Mir-17-P2c  Ocu-Mir-17-P4a  Ocu-Mir-17-P4c  Ocu-Mir-17-P4d 
Orthologues Ami-Mir-17-P1d  Bta-Mir-17-P1d  Cfa-Mir-17-P1d  Cja-Mir-17-P1d  Cmi-Mir-17-P1d  Cpi-Mir-17-P1d  Cpo-Mir-17-P1d  Dno-Mir-17-P1d  Eca-Mir-17-P1d  Ete-Mir-17-P1d  Gmo-Mir-17-P1d  Hsa-Mir-17-P1d  Laf-Mir-17-P1d  Lch-Mir-17-P1d  Loc-Mir-17-P1d  Mal-Mir-17-P1d  Mml-Mir-17-P1d  Mmr-Mir-17-P1d  Mmu-Mir-17-P1d  Pab-Mir-17-P1d  Rno-Mir-17-P1d  Sto-Mir-17-P1d  Tni-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(oryCun2_add)		 chrUn0062: 102749-102810 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1d)		 Mir-17-P1d chrUn0062: 102749-102810 [+] UCSC Ensembl
Mir-17-P4d chrUn0062: 102971-103032 [+] UCSC Ensembl
Mir-92-P2d chrUn0062: 103178-103237 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGCCUCCUCCCACACCCGCCCUGCUGGGGCUAAAGUGCUGACAGUGCAGAUAGUGGUCCUGUCCGUGCUACCGCACUGUGGGUACUUGCUGCUCCAGCAGGGCACGCACGUCCACGGAAGGA
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Structure
        10          20        30         40        50          
CGCCUCCUCCCACACCC--             UA-|      G       AGAUAGUGGUCC 
                   GCCCUGCUGGGGC   AAGUGCU ACAGUGC            \
                   CGGGACGACCUCG   UUCAUGG UGUCACG            U
AGGAAGGCACCUGCACGCA             UCG^      G       CCAUCGUGCCUG 
120       110       100        90        80        70
Deep sequencing
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CommentThere are Dicer cuts +1 and +2.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
He Ki Te To Wh
Mature sequence

Ocu-Mir-17-P1d_5p
mirBase accessionMIMAT0048197
Sequence 
0- UAAAGUGCUGACAGUGCAGAUA -22
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Co-mature sequence

Ocu-Mir-17-P1d_3p
mirBase accessionMIMAT0048198
Sequence 
40- CCGCACUGUGGGUACUUGCUGC -62
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