| MirGeneDB ID | Laf-Mir-17-P1d |
|---|---|
| Family name | MIR-17 (all species) |
| Seed | AAAGUGC |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | Laf-Mir-17-P1a Laf-Mir-17-P1c Laf-Mir-17-P2a Laf-Mir-17-P2c Laf-Mir-17-P4a Laf-Mir-17-P4c Laf-Mir-17-P4d |
| Orthologues | Ami-Mir-17-P1d Bta-Mir-17-P1d Cfa-Mir-17-P1d Cja-Mir-17-P1d Cmi-Mir-17-P1d Cpi-Mir-17-P1d Cpo-Mir-17-P1d Dno-Mir-17-P1d Eca-Mir-17-P1d Ete-Mir-17-P1d Gmo-Mir-17-P1d Hsa-Mir-17-P1d Lch-Mir-17-P1d Loc-Mir-17-P1d Mal-Mir-17-P1d Mml-Mir-17-P1d Mmr-Mir-17-P1d Mmu-Mir-17-P1d Ocu-Mir-17-P1d Pab-Mir-17-P1d Rno-Mir-17-P1d Sto-Mir-17-P1d Tni-Mir-17-P1d |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010179.1: 713203-713264 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UCCUCCCUCCCACUCAGGCCCUGCCGGGGCUAAAGUGCUGACAGUGCAGAUAGUGGUCCUCUCCGUGCUACCGCACUGUGGGUACUUGCUGCUCCGGUAGGGCAUGCACGGCGUCCACAGAGGet precursor sequence |
| Structure | 10 20 30 40 50 UCCUCCCUCCCACUCAG-- UA-| G AGAUAGUGGUCC GCCCUGCCGGGGC AAGUGCU ACAGUGC \ CGGGAUGGCCUCG UUCAUGG UGUCACG U GAGACACCUGCGGCACGUA UCG^ G CCAUCGUGCCUC 120 110 100 90 80 70 |
| Deep sequencing | |
| Comment | There are Dicer cuts +1 and +2. |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Laf-Mir-17-P1d_5p |
| mirBase accession | None |
| Sequence |
0- UAAAGUGCUGACAGUGCAGAUA -22
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|
| Star sequence | Laf-Mir-17-P1d_3p* |
| mirBase accession | None |
| Sequence |
40- CCGCACUGUGGGUACUUGCUGC -62
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|
