Mir-17-P1d

MirGeneDB ID

Laf-Mir-17-P1d

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

African bush elephant (Loxodonta africana)

MiRBase ID

Paralogues

Laf-Mir-17-P1a Laf-Mir-17-P1c Laf-Mir-17-P2a Laf-Mir-17-P2c Laf-Mir-17-P4a Laf-Mir-17-P4c Laf-Mir-17-P4d

Orthologues

Ami-Mir-17-P1d Bta-Mir-17-P1d Cfa-Mir-17-P1d Cja-Mir-17-P1d Cmi-Mir-17-P1d Cpi-Mir-17-P1d Cpo-Mir-17-P1d Dno-Mir-17-P1d Eca-Mir-17-P1d Ete-Mir-17-P1d Gmo-Mir-17-P1d Hsa-Mir-17-P1d Lch-Mir-17-P1d Loc-Mir-17-P1d Mal-Mir-17-P1d Mml-Mir-17-P1d Mmr-Mir-17-P1d Mmu-Mir-17-P1d Ocu-Mir-17-P1d Pab-Mir-17-P1d Rno-Mir-17-P1d Sto-Mir-17-P1d Tni-Mir-17-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000001905.1_Loxafr3.0)

GL010179.1: 713203-713264 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCUCCCUCCCACUCAGGCCCUGCCGGGGCUAAAGUGCUGACAGUGCAGAUAGUGGUCCUCUCCGUGCUACCGCACUGUGGGUACUUGCUGCUCCGGUAGGGCAUGCACGGCGUCCACAGAG

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Structure

        10          20        30         40        50          
UCCUCCCUCCCACUCAG--             UA-|      G       AGAUAGUGGUCC 
                   GCCCUGCCGGGGC   AAGUGCU ACAGUGC            \
                   CGGGAUGGCCUCG   UUCAUGG UGUCACG            U
GAGACACCUGCGGCACGUA             UCG^      G       CCAUCGUGCCUC 
120       110       100        90        80        70

Deep sequencing

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Comment

There are Dicer cuts +1 and +2.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Wh

Mature sequence

Laf-Mir-17-P1d_5p

mirBase accession

None

Sequence

0- UAAAGUGCUGACAGUGCAGAUA -22

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Star sequence

Laf-Mir-17-P1d_3p*

mirBase accession

None

Sequence

40- CCGCACUGUGGGUACUUGCUGC -62

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