MirGeneDB ID | Cja-Mir-17-P1d |
---|---|
Family name | MIR-17 (all species) |
Seed | CGCACUG |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-17-P1a Cja-Mir-17-P1c Cja-Mir-17-P2a Cja-Mir-17-P2c Cja-Mir-17-P4a Cja-Mir-17-P4c Cja-Mir-17-P4d |
Orthologues | Ami-Mir-17-P1d Bta-Mir-17-P1d Cfa-Mir-17-P1d Cmi-Mir-17-P1d Cpi-Mir-17-P1d Cpo-Mir-17-P1d Dno-Mir-17-P1d Eca-Mir-17-P1d Ete-Mir-17-P1d Gmo-Mir-17-P1d Hsa-Mir-17-P1d Laf-Mir-17-P1d Lch-Mir-17-P1d Loc-Mir-17-P1d Mal-Mir-17-P1d Mml-Mir-17-P1d Mmr-Mir-17-P1d Mmu-Mir-17-P1d Ocu-Mir-17-P1d Pab-Mir-17-P1d Rno-Mir-17-P1d Sto-Mir-17-P1d Tni-Mir-17-P1d |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021916.1: 11550569-11550630 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GCCUCCCUCCUGCUCCAGCCCUGCCGGGGCUAAAGUGCUGACAGUGCAGAUAGUGGUCCUCUCCGUGCUACCGCACUGUGGGUACUUGCUGCUCCAGCAGGGCACGCACAGCAUCUGCAGAGGet precursor sequence |
Structure | 10 20 30 40 50 GCCUCCCUCCUGCUCCA-- C UA-| G AGAUAGUGGUCC GCCCUGC GGGGC AAGUGCU ACAGUGC \ CGGGACG CCUCG UUCAUGG UGUCACG U GAGACGUCUACGACACGCA A UCG^ G CCAUCGUGCCUC 120 110 100 90 80 70 |
Deep sequencing | |
Comment | There are Dicer cuts +1 and +2 on both arms. |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Star sequence | Cja-Mir-17-P1d_5p* |
mirBase accession | None |
Sequence |
0- UAAAGUGCUGACAGUGCAGAU -21
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|
Mature sequence | Cja-Mir-17-P1d_3p |
mirBase accession | None |
Sequence |
40- CCGCACUGUGGGUACUUGCUGC -62
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