MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-17-P1d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-106b
Paralogues Cfa-Mir-17-P1a  Cfa-Mir-17-P1c  Cfa-Mir-17-P2a  Cfa-Mir-17-P2c  Cfa-Mir-17-P4a  Cfa-Mir-17-P4c  Cfa-Mir-17-P4d 
Orthologues Ami-Mir-17-P1d  Bta-Mir-17-P1d  Cja-Mir-17-P1d  Cmi-Mir-17-P1d  Cpi-Mir-17-P1d  Cpo-Mir-17-P1d  Dno-Mir-17-P1d  Eca-Mir-17-P1d  Ete-Mir-17-P1d  Gmo-Mir-17-P1d  Hsa-Mir-17-P1d  Laf-Mir-17-P1d  Lch-Mir-17-P1d  Loc-Mir-17-P1d  Mal-Mir-17-P1d  Mml-Mir-17-P1d  Mmr-Mir-17-P1d  Mmu-Mir-17-P1d  Ocu-Mir-17-P1d  Pab-Mir-17-P1d  Rno-Mir-17-P1d  Sto-Mir-17-P1d  Tni-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)		 chr6: 9498558-9498617 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1d)		 Mir-17-P1d chr6: 9498558-9498617 [+] UCSC Ensembl
Mir-17-P4d chr6: 9498780-9498841 [+] UCSC Ensembl
Mir-92-P2d chr6: 9498993-9499051 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCUCCCUCCCACUCAGGCCCUGCCGGUGCUAAAGUGCUGACAGUGCAGAUAGCGGUCCUCCGUGCUACCGCACUGUGGGUACUUGCUGCUCCGGCAGGGCACGCACGGCGUUCCCGGAG
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Structure
        10          20        30         40        50         
GCCUCCCUCCCACUCAG--          U  UA-|      G       AGAUAGCGGUC 
                   GCCCUGCCGG GC   AAGUGCU ACAGUGC           \
                   CGGGACGGCC CG   UUCAUGG UGUCACG           C
GAGGCCCUUGCGGCACGCA          U  UCG^      G       CCAUCGUGCCU 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere are Dicer cuts +1 and +2.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-17-P1d_5p
mirBase accessionMIMAT0006695
Sequence 
0- UAAAGUGCUGACAGUGCAGAU -21
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Proposed targets TargetScanVert: cfa-miR-106b
miRDB: MIMAT0006695
Co-mature sequence

Cfa-Mir-17-P1d_3p
mirBase accessionNone
Sequence 
38- CCGCACUGUGGGUACUUGCUGC -60
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