Mir-92-P2d

MirGeneDB ID

Cfa-Mir-92-P2d

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-25

Paralogues

Cfa-Mir-92-P1a Cfa-Mir-92-P1c Cfa-Mir-92-P1d Cfa-Mir-92-P2a Cfa-Mir-92-P2c

Orthologues

Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2d Cel-Mir-92 Cja-Mir-92-P2d Cmi-Mir-92-P2d Cpo-Mir-92-P2d Dno-Mir-92-P2d Dre-Mir-92-P2d Eca-Mir-92-P2d Esc-Mir-92 Ete-Mir-92-P2d Gmo-Mir-92-P2d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2d Isc-Mir-92 Laf-Mir-92-P2d Lch-Mir-92-P2d Loc-Mir-92-P2d Mal-Mir-92-P2d Mdo-Mir-92-P2d Mml-Mir-92-P2d Mmr-Mir-92-P2d Mmu-Mir-92-P2d Oan-Mir-92-P2d Obi-Mir-92 Ocu-Mir-92-P2d Pab-Mir-92-P2d Rno-Mir-92-P2d Sha-Mir-92-P2d Sme-Mir-92 Tni-Mir-92-P2d Xla-Mir-92-P2d3 Xla-Mir-92-P2d4 Xtr-Mir-92-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(canFam3_add)

chr6: 9498993-9499051 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2d)

Mir-17-P1d chr6: 9498558-9498617 [+] UCSC Ensembl
Mir-17-P4d chr6: 9498780-9498841 [+] UCSC Ensembl
Mir-92-P2d chr6: 9498993-9499051 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCUGAACCCCGGGACUGGCCAGCGUUGAGAGGCGGAGACUUGGGCAAUUGCUGGACGCUGCCCGCGCAUUGCACUUGUCUCGGUCUGACAGUGCCGGCCCCGCACUGCAGCUGCUGGG

Get precursor sequence

Structure

        10          20        30        40          50        
AGCUGAACCCCGGGACU--    A      AG    G     UU  -     -|  UGGAC 
                   GGCC GCGUUG  AGGC GAGAC  GG GCAAU UGC     G
                   CCGG CGUGAC  UCUG CUCUG  UC CGUUA GCG     C
GGGUCGUCGACGUCACGCC    C      AG    G     U-  A     C^  CCCGU 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-92-P2d_5p*

mirBase accession

None

Sequence

0- AGGCGGAGACUUGGGCAAUUGCU -23

Get sequence

Mature sequence

Cfa-Mir-92-P2d_3p

mirBase accession

MIMAT0006697

Sequence

37- CAUUGCACUUGUCUCGGUCUGA -59

Get sequence

Proposed targets

TargetScanVert: cfa-miR-25
miRDB: MIMAT0006697