MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-92-P2d

Family name MIR-92 (all species)
Seed AUUGCAC
Species Cow (Bos taurus)
MiRBase ID bta-mir-25
Paralogues Bta-Mir-92-P1a  Bta-Mir-92-P1c  Bta-Mir-92-P1d  Bta-Mir-92-P2a  Bta-Mir-92-P2c 
Orthologues Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Cel-Mir-92  Cfa-Mir-92-P2d  Cja-Mir-92-P2d  Cmi-Mir-92-P2d  Cpo-Mir-92-P2d  Dno-Mir-92-P2d  Dre-Mir-92-P2d  Eca-Mir-92-P2d  Esc-Mir-92  Ete-Mir-92-P2d  Gmo-Mir-92-P2d  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P2d  Isc-Mir-92  Laf-Mir-92-P2d  Lch-Mir-92-P2d  Loc-Mir-92-P2d  Mal-Mir-92-P2d  Mdo-Mir-92-P2d  Mml-Mir-92-P2d  Mmr-Mir-92-P2d  Mmu-Mir-92-P2d  Oan-Mir-92-P2d  Obi-Mir-92  Ocu-Mir-92-P2d  Pab-Mir-92-P2d  Rno-Mir-92-P2d  Sha-Mir-92-P2d  Sme-Mir-92  Tni-Mir-92-P2d  Xla-Mir-92-P2d3  Xla-Mir-92-P2d4  Xtr-Mir-92-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037352.1: 36355979-36356038 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P2d)		 Mir-17-P1d NC_037352.1: 36355574-36355633 [+] UCSC Ensembl
Mir-17-P4d NC_037352.1: 36355776-36355837 [+] UCSC Ensembl
Mir-92-P2d NC_037352.1: 36355979-36356038 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCUGCACACCGGGACUGGCCAGUGUUGAGAGGCGGAGACUUGGGCAAUUGCUGGACGCUGCCCCGGGCAUUGCACUUGUCUCGGUCUGACAGUGCCGGCCCCACACUGCGGAUGCCUGG
Get precursor sequence
Structure
        10          20        30        40         50          
AGCUGCACACCGGGACU--|   A UG   AG    G     UU  -     U   GGACGC 
                   GGCC G  UUG  AGGC GAGAC  GG GCAAU GCU      \
                   CCGG C  GAC  UCUG CUCUG  UC CGUUA CGG      U
GGUCCGUAGGCGUCACACC^   C GU   AG    G     U-  A     -   GCCCCG 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-92-P2d_5p*
mirBase accessionNone
Sequence 
0- AGGCGGAGACUUGGGCAAUUGCU -23
Get sequence
Mature sequence

Bta-Mir-92-P2d_3p
mirBase accessionMIMAT0003853
Sequence 
38- CAUUGCACUUGUCUCGGUCUGA -60
Get sequence
Proposed targets TargetScanVert: bta-miR-25