MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-92-P2d

Family name MIR-92 (all species)
Seed AUUGCAC
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-25
Paralogues Sha-Mir-92-P1a  Sha-Mir-92-P1c  Sha-Mir-92-P1d  Sha-Mir-92-P2a  Sha-Mir-92-P2c 
Orthologues Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2d  Cel-Mir-92  Cfa-Mir-92-P2d  Cja-Mir-92-P2d  Cmi-Mir-92-P2d  Cpo-Mir-92-P2d  Dno-Mir-92-P2d  Dre-Mir-92-P2d  Eca-Mir-92-P2d  Esc-Mir-92  Ete-Mir-92-P2d  Gmo-Mir-92-P2d  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P2d  Isc-Mir-92  Laf-Mir-92-P2d  Lch-Mir-92-P2d  Loc-Mir-92-P2d  Mal-Mir-92-P2d  Mdo-Mir-92-P2d  Mml-Mir-92-P2d  Mmr-Mir-92-P2d  Mmu-Mir-92-P2d  Oan-Mir-92-P2d  Obi-Mir-92  Ocu-Mir-92-P2d  Pab-Mir-92-P2d  Rno-Mir-92-P2d  Sme-Mir-92  Tni-Mir-92-P2d  Xla-Mir-92-P2d3  Xla-Mir-92-P2d4  Xtr-Mir-92-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(DEVIL_add)		 GL856864.1: 888135-888194 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P2d)		 Mir-17-P4d GL856864.1: 887847-887908 [+] UCSC Ensembl
Mir-92-P2d GL856864.1: 888135-888194 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACAGGCCAUCUGGACUGGCCAGUGUUGAGAGGCGGAGACUUGGGCAAUUGCUGAACACUGCCCUGGGCAUUGCACUUGUCUCGGUCUGACAGUGCUGGCAAAACACAGCACAUCCUGGG
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Structure
        10          20        30        40         50          
UACAGGCCAUCUGGACUG--|    UG   AG    G     UU  -     U   GAACAC 
                    GCCAG  UUG  AGGC GAGAC  GG GCAAU GCU      \
                    CGGUC  GAC  UCUG CUCUG  UC CGUUA CGG      U
GGGUCCUACACGACACAAAA^    GU   AG    G     U-  A     -   GUCCCG 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-92-P2d_5p*
mirBase accessionNone
Sequence 
0- AGGCGGAGACUUGGGCAAUUGCU -23
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Mature sequence

Sha-Mir-92-P2d_3p
mirBase accessionMIMAT0022820
Sequence 
38- CAUUGCACUUGUCUCGGUCUGA -60
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