Mir-92-P2d

MirGeneDB ID

Rno-Mir-92-P2d

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-25

Paralogues

Rno-Mir-92-P1a Rno-Mir-92-P1c Rno-Mir-92-P1d Rno-Mir-92-P2a Rno-Mir-92-P2c

Orthologues

Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2d Cel-Mir-92 Cfa-Mir-92-P2d Cja-Mir-92-P2d Cmi-Mir-92-P2d Cpo-Mir-92-P2d Dno-Mir-92-P2d Dre-Mir-92-P2d Eca-Mir-92-P2d Esc-Mir-92 Ete-Mir-92-P2d Gmo-Mir-92-P2d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2d Isc-Mir-92 Laf-Mir-92-P2d Lch-Mir-92-P2d Loc-Mir-92-P2d Mal-Mir-92-P2d Mdo-Mir-92-P2d Mml-Mir-92-P2d Mmr-Mir-92-P2d Mmu-Mir-92-P2d Oan-Mir-92-P2d Obi-Mir-92 Ocu-Mir-92-P2d Pab-Mir-92-P2d Sha-Mir-92-P2d Sme-Mir-92 Tni-Mir-92-P2d Xla-Mir-92-P2d3 Xla-Mir-92-P2d4 Xtr-Mir-92-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr12: 19307351-19307410 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2d)

Mir-92-P2d chr12: 19307351-19307410 [-] UCSC Ensembl
Mir-17-P4d chr12: 19307555-19307615 [-] UCSC Ensembl
Mir-17-P1d chr12: 19307761-19307822 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGACACCCACCGGGACUGGCCAGUGUUGAGAGGCGGAGACACGGGCAAUUGCUGGACGCUGCCCUGGGCAUUGCACUUGUCUCGGUCUGACAGUGCCGGCCCAACACUGCAGAUGUGGGG

Get precursor sequence

Structure

        10          20        30        40         50          
GGACACCCACCGGGACU--|   A UG   AG    G      C  -     U   GGACGC 
                   GGCC G  UUG  AGGC GAGACA GG GCAAU GCU      \
                   CCGG C  GAC  UCUG CUCUGU UC CGUUA CGG      U
GGGGUGUAGACGUCACAAC^   C GU   AG    G      -  A     -   GUCCCG 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-92-P2d_5p*

mirBase accession

MIMAT0004713

Sequence

0- AGGCGGAGACACGGGCAAUUGCU -23

Get sequence

Proposed targets

microrna.org: MIMAT0004713
TargetScanVert: rno-miR-25-5p
miRDB: MIMAT0004713

Mature sequence

Rno-Mir-92-P2d_3p

mirBase accession

MIMAT0000795

Sequence

38- CAUUGCACUUGUCUCGGUCUGA -60

Get sequence

Proposed targets

microrna.org: MIMAT0000795
TargetScanVert: rno-miR-25-3p
miRDB: MIMAT0000795