Mir-17-P4d

MirGeneDB ID

Rno-Mir-17-P4d

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-93

Paralogues

Rno-Mir-17-P1a Rno-Mir-17-P1c Rno-Mir-17-P1d Rno-Mir-17-P2a Rno-Mir-17-P2c Rno-Mir-17-P4a Rno-Mir-17-P4c

Orthologues

Ami-Mir-17-P4d Bta-Mir-17-P4d Cfa-Mir-17-P4d Cja-Mir-17-P4d Cmi-Mir-17-P4d Cpi-Mir-17-P4d Cpo-Mir-17-P4d Dno-Mir-17-P4d Dre-Mir-17-P4d Eca-Mir-17-P4d Ete-Mir-17-P4d Gmo-Mir-17-P4d Hsa-Mir-17-P4d Laf-Mir-17-P4d Lch-Mir-17-P4d Loc-Mir-17-P4d Mal-Mir-17-P4d Mdo-Mir-17-P4d Mml-Mir-17-P4d Mmr-Mir-17-P4d Mmu-Mir-17-P4d Mun-Mir-17-P4d Ocu-Mir-17-P4d Pab-Mir-17-P4d Sha-Mir-17-P4d Tni-Mir-17-P4d Xla-Mir-17-P4d3 Xla-Mir-17-P4d4 Xtr-Mir-17-P4d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr12: 19307555-19307615 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4d)

Mir-92-P2d chr12: 19307351-19307410 [-] UCSC Ensembl
Mir-17-P4d chr12: 19307555-19307615 [-] UCSC Ensembl
Mir-17-P1d chr12: 19307761-19307822 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCCCUCUUGGACCUUUAGUCAUGGGGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGCAUUGCCUGACCUACUGCUGAGCUAGCACUUCCCGAGCCCCCAGGACACAGCCUCUGACAGUGGCC

Get precursor sequence

Structure

        10          20        30          40        50          
CCCCUCUUGGACCUUUA--   A         CA-       -|    U    G   UGCAUU 
                   GUC UGGGGGCUC   AAGUGCU GUUCG GCAG UAG      \
                   CAG ACCCCCGAG   UUCACGA CGAGU CGUC AUC      G
CCGGUGACAGUCUCCGACA   G         CCC       U^    -    -   CAGUCC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-17-P4d_5p

mirBase accession

MIMAT0000817

Sequence

0- CAAAGUGCUGUUCGUGCAGGUAG -23

Get sequence

Proposed targets

microrna.org: MIMAT0000817
TargetScanVert: rno-miR-93-5p
miRDB: MIMAT0000817

Star sequence

Rno-Mir-17-P4d_3p*

mirBase accession

MIMAT0017109

Sequence

38- ACUGCUGAGCUAGCACUUCCCGA -61

Get sequence

Proposed targets

TargetScanVert: rno-miR-93-3p
miRDB: MIMAT0017109