MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-17-P4d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-93
Paralogues Rno-Mir-17-P1a  Rno-Mir-17-P1c  Rno-Mir-17-P1d  Rno-Mir-17-P2a  Rno-Mir-17-P2c  Rno-Mir-17-P4a  Rno-Mir-17-P4c 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chr12: 19307555-19307615 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4d)
Mir-92-P2d chr12: 19307351-19307410 [-] UCSC Ensembl
Mir-17-P4d chr12: 19307555-19307615 [-] UCSC Ensembl
Mir-17-P1d chr12: 19307761-19307822 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCUCUUGGACCUUUAGUCAUGGGGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGCAUUGCCUGACCUACUGCUGAGCUAGCACUUCCCGAGCCCCCAGGACACAGCCUCUGACAGUGGCC
Get precursor sequence
Structure
        10          20        30          40        50          
CCCCUCUUGGACCUUUA--   A         CA-       -|    U    G   UGCAUU 
                   GUC UGGGGGCUC   AAGUGCU GUUCG GCAG UAG      \
                   CAG ACCCCCGAG   UUCACGA CGAGU CGUC AUC      G
CCGGUGACAGUCUCCGACA   G         CCC       U^    -    -   CAGUCC 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-17-P4d_5p

mirBase accessionMIMAT0000817
Sequence
0- CAAAGUGCUGUUCGUGCAGGUAG -23
Get sequence
Proposed targets microrna.org: MIMAT0000817
TargetScanVert: rno-miR-93-5p
miRDB: MIMAT0000817
Star sequence

Rno-Mir-17-P4d_3p*

mirBase accessionMIMAT0017109
Sequence
38- ACUGCUGAGCUAGCACUUCCCGA -61
Get sequence
Proposed targets TargetScanVert: rno-miR-93-3p
miRDB: MIMAT0017109