MirGeneDB 2.1
MirGeneDB ID

Cfa-Mir-17-P4d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-93
Paralogues Cfa-Mir-17-P1a  Cfa-Mir-17-P1c  Cfa-Mir-17-P1d  Cfa-Mir-17-P2a  Cfa-Mir-17-P2c  Cfa-Mir-17-P4a  Cfa-Mir-17-P4c 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)		 chr6: 9498780-9498841 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4d)		 Mir-17-P1d chr6: 9498558-9498617 [+] UCSC Ensembl
Mir-17-P4d chr6: 9498780-9498841 [+] UCSC Ensembl
Mir-92-P2d chr6: 9498993-9499051 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCACGCCUCGGACCUUAGUCCCGGGGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGUGAUUACCUGACCUACUGCUGAGCUAGCACUUCCCGAGCCCCAGGGAUGCGACCUCUCUGCCAGUCG
Get precursor sequence
Structure
        10          20        30          40        50        60
GCACGCCUCGGACCUUA--     G       CA-       -|    U    G   UGUGAU 
                   GUCCC GGGGCUC   AAGUGCU GUUCG GCAG UAG      U
                   UAGGG CCCCGAG   UUCACGA CGAGU CGUC AUC      A
GCUGACCGUCUCUCCAGCG     A       CCC       U^    -    -   CAGUCC 
120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-17-P4d_5p
mirBase accessionMIMAT0006696
Sequence 
0- CAAAGUGCUGUUCGUGCAGGUAG -23
Get sequence
Proposed targets TargetScanVert: cfa-miR-93
miRDB: MIMAT0006696
Star sequence

Cfa-Mir-17-P4d_3p*
mirBase accessionNone
Sequence 
39- ACUGCUGAGCUAGCACUUCCCGA -62
Get sequence